Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22300

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22295 and AO356_22300 are separated by 196 nucleotidesAO356_22300 and AO356_22305 are separated by 18 nucleotidesAO356_22305 and AO356_22310 are separated by 245 nucleotides AO356_22295: AO356_22295 - AP endonuclease, at 4,986,260 to 4,987,339 _22295 AO356_22300: AO356_22300 - MFS transporter, at 4,987,536 to 4,988,768 _22300 AO356_22305: AO356_22305 - alginate lyase, at 4,988,787 to 4,989,443 _22305 AO356_22310: AO356_22310 - hypothetical protein, at 4,989,689 to 4,990,024 _22310 Position (kb) 4987 4988 4989Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4986.717 kb on - strand, within AO356_22295at 4986.723 kb on - strand, within AO356_22295at 4986.723 kb on - strand, within AO356_22295at 4986.927 kb on - strand, within AO356_22295at 4986.927 kb on - strand, within AO356_22295at 4986.962 kb on + strand, within AO356_22295at 4986.962 kb on + strand, within AO356_22295at 4986.963 kb on - strand, within AO356_22295at 4986.963 kb on - strand, within AO356_22295at 4987.052 kb on + strand, within AO356_22295at 4987.052 kb on + strand, within AO356_22295at 4987.053 kb on - strand, within AO356_22295at 4987.151 kb on + strand, within AO356_22295at 4987.329 kb on + strandat 4987.330 kb on - strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.520 kb on + strandat 4987.521 kb on - strandat 4987.521 kb on - strandat 4987.586 kb on + strandat 4987.788 kb on + strand, within AO356_22300at 4987.789 kb on - strand, within AO356_22300at 4987.797 kb on + strand, within AO356_22300at 4987.830 kb on + strand, within AO356_22300at 4987.831 kb on - strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.854 kb on + strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4988.033 kb on + strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.185 kb on - strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.239 kb on - strand, within AO356_22300at 4988.409 kb on + strand, within AO356_22300at 4988.409 kb on + strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.425 kb on - strand, within AO356_22300at 4988.488 kb on - strand, within AO356_22300at 4988.518 kb on - strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.815 kb on + strandat 4988.816 kb on - strandat 4988.842 kb on + strandat 4988.863 kb on + strand, within AO356_22305at 4988.863 kb on + strand, within AO356_22305at 4988.863 kb on + strand, within AO356_22305at 4988.864 kb on - strand, within AO356_22305at 4988.881 kb on + strand, within AO356_22305at 4988.882 kb on - strand, within AO356_22305at 4988.882 kb on - strand, within AO356_22305at 4988.888 kb on + strand, within AO356_22305at 4988.888 kb on + strand, within AO356_22305at 4988.889 kb on - strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.897 kb on - strand, within AO356_22305at 4988.980 kb on + strand, within AO356_22305at 4989.019 kb on + strand, within AO356_22305at 4989.019 kb on + strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.097 kb on + strand, within AO356_22305at 4989.220 kb on + strand, within AO356_22305at 4989.221 kb on - strand, within AO356_22305at 4989.287 kb on + strand, within AO356_22305at 4989.287 kb on + strand, within AO356_22305at 4989.288 kb on - strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.350 kb on - strand, within AO356_22305at 4989.350 kb on - strand, within AO356_22305at 4989.417 kb on - strandat 4989.417 kb on - strandat 4989.446 kb on + strandat 4989.446 kb on + strandat 4989.446 kb on + strandat 4989.447 kb on - strandat 4989.447 kb on - strandat 4989.447 kb on - strandat 4989.525 kb on - strandat 4989.620 kb on + strandat 4989.621 kb on - strandat 4989.621 kb on - strandat 4989.635 kb on - strandat 4989.639 kb on + strandat 4989.686 kb on + strandat 4989.686 kb on + strandat 4989.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,986,717 - AO356_22295 0.42 +0.1
4,986,723 - AO356_22295 0.43 -0.0
4,986,723 - AO356_22295 0.43 -0.4
4,986,927 - AO356_22295 0.62 +0.5
4,986,927 - AO356_22295 0.62 -0.3
4,986,962 + AO356_22295 0.65 -1.1
4,986,962 + AO356_22295 0.65 +0.5
4,986,963 - AO356_22295 0.65 -0.1
4,986,963 - AO356_22295 0.65 +1.1
4,987,052 + AO356_22295 0.73 -0.7
4,987,052 + AO356_22295 0.73 +0.2
4,987,053 - AO356_22295 0.73 -0.9
4,987,151 + AO356_22295 0.82 -1.2
4,987,329 + -1.4
4,987,330 - +0.4
4,987,520 + +0.5
4,987,520 + -0.7
4,987,520 + +1.2
4,987,520 + -0.1
4,987,520 + +0.6
4,987,521 - -0.4
4,987,521 - -0.1
4,987,586 + +0.8
4,987,788 + AO356_22300 0.20 -0.6
4,987,789 - AO356_22300 0.21 -0.6
4,987,797 + AO356_22300 0.21 +0.4
4,987,830 + AO356_22300 0.24 -1.8
4,987,831 - AO356_22300 0.24 -0.1
4,987,834 + AO356_22300 0.24 +0.4
4,987,834 + AO356_22300 0.24 -0.4
4,987,834 + AO356_22300 0.24 -0.2
4,987,834 + AO356_22300 0.24 +0.8
4,987,835 - AO356_22300 0.24 -0.0
4,987,835 - AO356_22300 0.24 +0.0
4,987,835 - AO356_22300 0.24 +0.6
4,987,835 - AO356_22300 0.24 -0.2
4,987,835 - AO356_22300 0.24 -1.9
4,987,835 - AO356_22300 0.24 +0.4
4,987,835 - AO356_22300 0.24 +0.8
4,987,835 - AO356_22300 0.24 -1.1
4,987,842 + AO356_22300 0.25 -0.4
4,987,842 + AO356_22300 0.25 -1.6
4,987,842 + AO356_22300 0.25 +0.4
4,987,842 + AO356_22300 0.25 +0.7
4,987,842 + AO356_22300 0.25 -1.9
4,987,842 + AO356_22300 0.25 -1.2
4,987,843 - AO356_22300 0.25 +0.1
4,987,843 - AO356_22300 0.25 +0.3
4,987,843 - AO356_22300 0.25 +1.7
4,987,843 - AO356_22300 0.25 +2.6
4,987,843 - AO356_22300 0.25 +0.8
4,987,843 - AO356_22300 0.25 +0.4
4,987,854 + AO356_22300 0.26 -2.0
4,987,855 - AO356_22300 0.26 +0.7
4,987,855 - AO356_22300 0.26 -1.2
4,987,855 - AO356_22300 0.26 +0.8
4,987,855 - AO356_22300 0.26 -2.8
4,987,855 - AO356_22300 0.26 +0.8
4,988,033 + AO356_22300 0.40 +1.0
4,988,034 - AO356_22300 0.40 -0.0
4,988,034 - AO356_22300 0.40 +0.2
4,988,076 + AO356_22300 0.44 +0.3
4,988,076 + AO356_22300 0.44 +1.2
4,988,185 - AO356_22300 0.53 +0.2
4,988,235 + AO356_22300 0.57 -2.4
4,988,235 + AO356_22300 0.57 -0.6
4,988,236 - AO356_22300 0.57 -0.6
4,988,236 - AO356_22300 0.57 -1.9
4,988,236 - AO356_22300 0.57 -1.1
4,988,239 - AO356_22300 0.57 +0.1
4,988,409 + AO356_22300 0.71 +0.3
4,988,409 + AO356_22300 0.71 +0.8
4,988,410 - AO356_22300 0.71 +1.7
4,988,410 - AO356_22300 0.71 -0.6
4,988,410 - AO356_22300 0.71 -0.8
4,988,425 - AO356_22300 0.72 -0.5
4,988,488 - AO356_22300 0.77 -0.0
4,988,518 - AO356_22300 0.80 -1.9
4,988,583 + AO356_22300 0.85 +0.4
4,988,583 + AO356_22300 0.85 -0.6
4,988,583 + AO356_22300 0.85 -0.2
4,988,584 - AO356_22300 0.85 -0.0
4,988,584 - AO356_22300 0.85 +0.7
4,988,584 - AO356_22300 0.85 +0.8
4,988,584 - AO356_22300 0.85 +0.8
4,988,584 - AO356_22300 0.85 -2.6
4,988,584 - AO356_22300 0.85 +0.5
4,988,815 + +0.2
4,988,816 - +1.0
4,988,842 + -1.1
4,988,863 + AO356_22305 0.12 +1.6
4,988,863 + AO356_22305 0.12 -1.6
4,988,863 + AO356_22305 0.12 +1.9
4,988,864 - AO356_22305 0.12 +0.2
4,988,881 + AO356_22305 0.14 +0.2
4,988,882 - AO356_22305 0.14 -0.4
4,988,882 - AO356_22305 0.14 +0.3
4,988,888 + AO356_22305 0.15 +0.2
4,988,888 + AO356_22305 0.15 -0.7
4,988,889 - AO356_22305 0.16 +1.6
4,988,890 + AO356_22305 0.16 +2.2
4,988,890 + AO356_22305 0.16 +0.8
4,988,890 + AO356_22305 0.16 -2.6
4,988,890 + AO356_22305 0.16 +0.4
4,988,890 + AO356_22305 0.16 +0.2
4,988,890 + AO356_22305 0.16 +1.1
4,988,891 - AO356_22305 0.16 -0.0
4,988,891 - AO356_22305 0.16 +0.1
4,988,891 - AO356_22305 0.16 +1.4
4,988,891 - AO356_22305 0.16 +0.1
4,988,897 - AO356_22305 0.17 +1.5
4,988,980 + AO356_22305 0.29 -0.2
4,989,019 + AO356_22305 0.35 -1.3
4,989,019 + AO356_22305 0.35 +0.7
4,989,020 - AO356_22305 0.35 -0.9
4,989,020 - AO356_22305 0.35 -0.1
4,989,020 - AO356_22305 0.35 +1.2
4,989,097 + AO356_22305 0.47 -0.4
4,989,220 + AO356_22305 0.66 +0.1
4,989,221 - AO356_22305 0.66 +0.3
4,989,287 + AO356_22305 0.76 +0.2
4,989,287 + AO356_22305 0.76 -0.2
4,989,288 - AO356_22305 0.76 +1.1
4,989,349 + AO356_22305 0.86 -1.6
4,989,349 + AO356_22305 0.86 +0.3
4,989,349 + AO356_22305 0.86 +1.6
4,989,350 - AO356_22305 0.86 -0.6
4,989,350 - AO356_22305 0.86 +0.1
4,989,417 - +0.4
4,989,417 - -0.2
4,989,446 + +1.2
4,989,446 + -0.6
4,989,446 + -0.0
4,989,447 - +0.5
4,989,447 - +0.6
4,989,447 - +0.8
4,989,525 - -1.5
4,989,620 + -0.1
4,989,621 - +1.2
4,989,621 - +1.6
4,989,635 - -0.9
4,989,639 + +0.3
4,989,686 + -0.7
4,989,686 + +0.2
4,989,687 - +0.5

Or see this region's nucleotide sequence