Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22185 and AO356_22190 overlap by 4 nucleotides AO356_22190 and AO356_22195 are separated by 15 nucleotides AO356_22195 and AO356_22200 are separated by 0 nucleotides
AO356_22185: AO356_22185 - recombination factor protein RarA, at 4,966,409 to 4,967,734
_22185
AO356_22190: AO356_22190 - camphor resistance protein CrcB, at 4,967,731 to 4,968,105
_22190
AO356_22195: AO356_22195 - serine--tRNA ligase, at 4,968,121 to 4,969,401
_22195
AO356_22200: AO356_22200 - sirohydrochlorin ferrochelatase, at 4,969,402 to 4,970,796
_22200
Position (kb) 4968
4969
4970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4967.154 kb on - strand, within AO356_22185 at 4967.213 kb on + strand, within AO356_22185 at 4967.214 kb on - strand, within AO356_22185 at 4967.255 kb on + strand, within AO356_22185 at 4967.255 kb on + strand, within AO356_22185 at 4967.256 kb on - strand, within AO356_22185 at 4967.256 kb on - strand, within AO356_22185 at 4967.256 kb on - strand, within AO356_22185 at 4967.256 kb on - strand, within AO356_22185 at 4967.402 kb on + strand, within AO356_22185 at 4967.435 kb on + strand, within AO356_22185 at 4967.435 kb on + strand, within AO356_22185 at 4967.435 kb on + strand, within AO356_22185 at 4967.435 kb on + strand, within AO356_22185 at 4967.436 kb on - strand, within AO356_22185 at 4967.436 kb on - strand, within AO356_22185 at 4967.436 kb on - strand, within AO356_22185 at 4967.552 kb on + strand, within AO356_22185 at 4967.553 kb on - strand, within AO356_22185 at 4967.600 kb on + strand, within AO356_22185 at 4967.600 kb on + strand, within AO356_22185 at 4967.600 kb on + strand, within AO356_22185 at 4967.633 kb on + strand at 4967.633 kb on + strand at 4967.744 kb on + strand at 4967.744 kb on + strand at 4967.744 kb on + strand at 4967.833 kb on + strand, within AO356_22190 at 4967.833 kb on + strand, within AO356_22190 at 4967.833 kb on + strand, within AO356_22190 at 4967.833 kb on + strand, within AO356_22190 at 4967.885 kb on + strand, within AO356_22190 at 4967.885 kb on + strand, within AO356_22190 at 4967.885 kb on + strand, within AO356_22190 at 4967.885 kb on + strand, within AO356_22190 at 4967.887 kb on + strand, within AO356_22190 at 4968.037 kb on + strand, within AO356_22190 at 4969.852 kb on + strand, within AO356_22200 at 4969.852 kb on + strand, within AO356_22200 at 4969.852 kb on + strand, within AO356_22200 at 4970.056 kb on + strand, within AO356_22200 at 4970.057 kb on - strand, within AO356_22200 at 4970.057 kb on - strand, within AO356_22200 at 4970.141 kb on - strand, within AO356_22200 at 4970.200 kb on + strand, within AO356_22200 at 4970.200 kb on + strand, within AO356_22200 at 4970.201 kb on - strand, within AO356_22200 at 4970.201 kb on - strand, within AO356_22200
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,967,154 - AO356_22185 0.56 -4.2 4,967,213 + AO356_22185 0.61 -0.5 4,967,214 - AO356_22185 0.61 -3.2 4,967,255 + AO356_22185 0.64 -2.9 4,967,255 + AO356_22185 0.64 -1.1 4,967,256 - AO356_22185 0.64 -3.3 4,967,256 - AO356_22185 0.64 -3.2 4,967,256 - AO356_22185 0.64 -1.5 4,967,256 - AO356_22185 0.64 -3.0 4,967,402 + AO356_22185 0.75 -3.1 4,967,435 + AO356_22185 0.77 -3.1 4,967,435 + AO356_22185 0.77 -2.9 4,967,435 + AO356_22185 0.77 -1.5 4,967,435 + AO356_22185 0.77 -4.2 4,967,436 - AO356_22185 0.77 -3.2 4,967,436 - AO356_22185 0.77 -1.7 4,967,436 - AO356_22185 0.77 -0.9 4,967,552 + AO356_22185 0.86 -2.9 4,967,553 - AO356_22185 0.86 -1.7 4,967,600 + AO356_22185 0.90 -2.6 4,967,600 + AO356_22185 0.90 -2.0 4,967,600 + AO356_22185 0.90 -1.5 4,967,633 + -3.2 4,967,633 + -3.3 4,967,744 + +0.6 4,967,744 + +1.0 4,967,744 + -0.9 4,967,833 + AO356_22190 0.27 -0.0 4,967,833 + AO356_22190 0.27 +0.9 4,967,833 + AO356_22190 0.27 +0.4 4,967,833 + AO356_22190 0.27 +0.5 4,967,885 + AO356_22190 0.41 +0.6 4,967,885 + AO356_22190 0.41 -0.2 4,967,885 + AO356_22190 0.41 -0.3 4,967,885 + AO356_22190 0.41 -0.0 4,967,887 + AO356_22190 0.42 +1.3 4,968,037 + AO356_22190 0.82 -1.1 4,969,852 + AO356_22200 0.32 +1.0 4,969,852 + AO356_22200 0.32 +0.4 4,969,852 + AO356_22200 0.32 +1.0 4,970,056 + AO356_22200 0.47 +0.9 4,970,057 - AO356_22200 0.47 -0.9 4,970,057 - AO356_22200 0.47 +1.0 4,970,141 - AO356_22200 0.53 +2.6 4,970,200 + AO356_22200 0.57 -0.5 4,970,200 + AO356_22200 0.57 -0.1 4,970,201 - AO356_22200 0.57 +0.6 4,970,201 - AO356_22200 0.57 +1.6
Or see this region's nucleotide sequence