Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22175

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22170 and AO356_22175 are separated by 261 nucleotidesAO356_22175 and AO356_22180 are separated by 58 nucleotidesAO356_22180 and AO356_22185 are separated by 214 nucleotides AO356_22170: AO356_22170 - thioredoxin reductase, at 4,961,886 to 4,962,845 _22170 AO356_22175: AO356_22175 - cell division protein FtsK, at 4,963,107 to 4,965,512 _22175 AO356_22180: AO356_22180 - outer membrane lipoprotein carrier protein LolA, at 4,965,571 to 4,966,194 _22180 AO356_22185: AO356_22185 - recombination factor protein RarA, at 4,966,409 to 4,967,734 _22185 Position (kb) 4963 4964 4965 4966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4962.248 kb on + strand, within AO356_22170at 4962.355 kb on + strand, within AO356_22170at 4962.355 kb on + strand, within AO356_22170at 4962.355 kb on + strand, within AO356_22170at 4962.355 kb on + strand, within AO356_22170at 4962.355 kb on + strand, within AO356_22170at 4962.356 kb on - strand, within AO356_22170at 4962.356 kb on - strand, within AO356_22170at 4962.356 kb on - strand, within AO356_22170at 4962.377 kb on + strand, within AO356_22170at 4962.491 kb on - strand, within AO356_22170at 4962.533 kb on + strand, within AO356_22170at 4962.533 kb on + strand, within AO356_22170at 4962.534 kb on - strand, within AO356_22170at 4962.534 kb on - strand, within AO356_22170at 4962.534 kb on - strand, within AO356_22170at 4962.534 kb on - strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.535 kb on + strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.536 kb on - strand, within AO356_22170at 4962.693 kb on - strand, within AO356_22170at 4962.775 kb on + strandat 4962.776 kb on - strandat 4962.776 kb on - strandat 4962.776 kb on - strandat 4962.790 kb on + strandat 4962.858 kb on + strandat 4962.858 kb on + strandat 4963.004 kb on + strandat 4963.239 kb on + strandat 4965.120 kb on + strand, within AO356_22175at 4965.484 kb on + strandat 4965.484 kb on + strandat 4966.192 kb on + strandat 4966.192 kb on + strandat 4966.192 kb on + strandat 4966.193 kb on - strandat 4966.193 kb on - strandat 4966.193 kb on - strandat 4966.193 kb on - strandat 4966.193 kb on - strandat 4966.402 kb on - strandat 4966.405 kb on - strandat 4966.405 kb on - strandat 4966.405 kb on - strandat 4966.405 kb on - strandat 4966.482 kb on - strandat 4966.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,962,248 + AO356_22170 0.38 +0.9
4,962,355 + AO356_22170 0.49 +2.9
4,962,355 + AO356_22170 0.49 +2.2
4,962,355 + AO356_22170 0.49 +2.0
4,962,355 + AO356_22170 0.49 +1.9
4,962,355 + AO356_22170 0.49 +0.7
4,962,356 - AO356_22170 0.49 +0.1
4,962,356 - AO356_22170 0.49 +0.6
4,962,356 - AO356_22170 0.49 +0.9
4,962,377 + AO356_22170 0.51 +1.6
4,962,491 - AO356_22170 0.63 -0.8
4,962,533 + AO356_22170 0.67 +1.9
4,962,533 + AO356_22170 0.67 -1.3
4,962,534 - AO356_22170 0.68 -0.3
4,962,534 - AO356_22170 0.68 -0.7
4,962,534 - AO356_22170 0.68 -1.4
4,962,534 - AO356_22170 0.68 -1.5
4,962,535 + AO356_22170 0.68 +1.8
4,962,535 + AO356_22170 0.68 +1.6
4,962,535 + AO356_22170 0.68 +2.4
4,962,535 + AO356_22170 0.68 +0.6
4,962,535 + AO356_22170 0.68 +2.2
4,962,535 + AO356_22170 0.68 +2.2
4,962,535 + AO356_22170 0.68 +1.2
4,962,535 + AO356_22170 0.68 +2.4
4,962,535 + AO356_22170 0.68 +1.8
4,962,535 + AO356_22170 0.68 +2.8
4,962,535 + AO356_22170 0.68 +1.5
4,962,536 - AO356_22170 0.68 -2.2
4,962,536 - AO356_22170 0.68 -1.9
4,962,536 - AO356_22170 0.68 -2.1
4,962,536 - AO356_22170 0.68 -2.4
4,962,536 - AO356_22170 0.68 -0.3
4,962,536 - AO356_22170 0.68 -2.5
4,962,536 - AO356_22170 0.68 -0.4
4,962,536 - AO356_22170 0.68 -1.7
4,962,536 - AO356_22170 0.68 -1.7
4,962,693 - AO356_22170 0.84 -1.4
4,962,775 + +1.7
4,962,776 - -3.9
4,962,776 - -3.6
4,962,776 - -3.3
4,962,790 + +2.5
4,962,858 + +1.0
4,962,858 + +2.2
4,963,004 + +2.1
4,963,239 + -2.1
4,965,120 + AO356_22175 0.84 -1.5
4,965,484 + +4.0
4,965,484 + +1.3
4,966,192 + +2.0
4,966,192 + +1.8
4,966,192 + +2.4
4,966,193 - -2.9
4,966,193 - -3.1
4,966,193 - -2.8
4,966,193 - -2.2
4,966,193 - -2.8
4,966,402 - -4.0
4,966,405 - -3.6
4,966,405 - -2.8
4,966,405 - -2.9
4,966,405 - -3.9
4,966,482 - -4.0
4,966,482 - -2.7

Or see this region's nucleotide sequence