Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21825 and AO356_21830 are separated by 96 nucleotides AO356_21830 and AO356_21835 are separated by 347 nucleotides AO356_21835 and AO356_21840 are separated by 175 nucleotides
AO356_21825: AO356_21825 - histidine kinase, at 4,885,931 to 4,887,994
_21825
AO356_21830: AO356_21830 - hypothetical protein, at 4,888,091 to 4,888,372
_21830
AO356_21835: AO356_21835 - glyoxalase, at 4,888,720 to 4,889,103
_21835
AO356_21840: AO356_21840 - N-methylproline demethylase, at 4,889,279 to 4,891,315
_21840
Position (kb)
4888
4889
4890 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4888.006 kb on + strand at 4888.006 kb on + strand at 4888.007 kb on - strand at 4888.370 kb on + strand at 4888.370 kb on + strand at 4888.616 kb on + strand at 4888.616 kb on + strand at 4888.722 kb on - strand at 4888.722 kb on - strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.776 kb on - strand, within AO356_21835 at 4889.043 kb on - strand, within AO356_21835 at 4889.092 kb on - strand at 4889.119 kb on - strand at 4889.165 kb on + strand at 4889.310 kb on + strand at 4889.311 kb on - strand at 4889.311 kb on - strand at 4889.311 kb on - strand at 4889.314 kb on + strand at 4889.315 kb on - strand at 4889.326 kb on + strand at 4889.327 kb on - strand at 4889.327 kb on - strand at 4889.329 kb on + strand at 4889.330 kb on - strand at 4889.460 kb on - strand at 4889.460 kb on - strand at 4889.470 kb on - strand at 4889.545 kb on - strand, within AO356_21840 at 4889.604 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.649 kb on + strand, within AO356_21840 at 4889.650 kb on - strand, within AO356_21840 at 4889.650 kb on - strand, within AO356_21840 at 4889.751 kb on - strand, within AO356_21840
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,887,789 + +0.7 4,887,789 + -0.6 4,887,789 + +2.3 4,887,790 - +0.9 4,887,790 - +1.0 4,887,790 - -2.1 4,887,790 - -0.0 4,887,790 - -1.3 4,888,006 + +1.2 4,888,006 + -1.4 4,888,007 - -1.2 4,888,370 + +0.3 4,888,370 + -0.6 4,888,616 + +0.4 4,888,616 + -0.4 4,888,722 - -1.9 4,888,722 - +0.0 4,888,739 + +0.1 4,888,739 + -0.2 4,888,739 + -0.6 4,888,739 + +1.0 4,888,776 - AO356_21835 0.15 +0.7 4,889,043 - AO356_21835 0.84 +0.4 4,889,092 - -0.5 4,889,119 - +0.6 4,889,165 + -0.8 4,889,310 + +0.7 4,889,311 - -0.2 4,889,311 - -0.4 4,889,311 - +0.2 4,889,314 + +0.3 4,889,315 - +0.9 4,889,326 + -0.5 4,889,327 - +1.4 4,889,327 - +1.1 4,889,329 + -2.9 4,889,330 - +0.5 4,889,460 - +0.6 4,889,460 - -0.2 4,889,470 - -0.4 4,889,545 - AO356_21840 0.13 +0.8 4,889,604 + AO356_21840 0.16 +1.2 4,889,649 + AO356_21840 0.18 -2.9 4,889,649 + AO356_21840 0.18 +0.0 4,889,649 + AO356_21840 0.18 +0.7 4,889,649 + AO356_21840 0.18 +0.4 4,889,649 + AO356_21840 0.18 +0.5 4,889,649 + AO356_21840 0.18 +0.4 4,889,650 - AO356_21840 0.18 -0.4 4,889,650 - AO356_21840 0.18 -1.3 4,889,751 - AO356_21840 0.23 -0.9
Or see this region's nucleotide sequence