Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21025 and AO356_21030 are separated by 203 nucleotides AO356_21030 and AO356_21035 are separated by 26 nucleotides AO356_21035 and AO356_21040 are separated by 72 nucleotides AO356_21040 and AO356_21045 are separated by 99 nucleotides
AO356_21025: AO356_21025 - AraC family transcriptional regulator, at 4,678,147 to 4,679,094
_21025
AO356_21030: AO356_21030 - oxidoreductase, at 4,679,298 to 4,680,035
_21030
AO356_21035: AO356_21035 - hypothetical protein, at 4,680,062 to 4,680,319
_21035
AO356_21040: AO356_21040 - dimethylglycine dehydrogenase, at 4,680,392 to 4,681,078
_21040
AO356_21045: AO356_21045 - AraC family transcriptional regulator, at 4,681,178 to 4,682,170
_21045
Position (kb) 4680
4681 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4679.086 kb on + strand at 4679.124 kb on - strand at 4679.136 kb on + strand at 4679.137 kb on - strand at 4679.173 kb on + strand at 4679.173 kb on + strand at 4679.174 kb on - strand at 4679.180 kb on - strand at 4679.237 kb on + strand at 4679.275 kb on + strand at 4679.276 kb on - strand at 4679.276 kb on - strand at 4679.660 kb on + strand, within AO356_21030 at 4679.760 kb on + strand, within AO356_21030 at 4679.775 kb on + strand, within AO356_21030 at 4679.775 kb on + strand, within AO356_21030 at 4679.776 kb on - strand, within AO356_21030 at 4679.989 kb on + strand at 4679.989 kb on + strand at 4680.088 kb on + strand, within AO356_21035 at 4680.155 kb on + strand, within AO356_21035 at 4680.155 kb on + strand, within AO356_21035 at 4680.155 kb on + strand, within AO356_21035 at 4680.156 kb on - strand, within AO356_21035 at 4680.174 kb on + strand, within AO356_21035 at 4680.175 kb on - strand, within AO356_21035 at 4680.175 kb on - strand, within AO356_21035 at 4680.188 kb on + strand, within AO356_21035 at 4680.189 kb on - strand, within AO356_21035 at 4680.201 kb on - strand, within AO356_21035 at 4680.207 kb on + strand, within AO356_21035 at 4680.228 kb on - strand, within AO356_21035 at 4680.228 kb on - strand, within AO356_21035 at 4680.281 kb on + strand, within AO356_21035 at 4680.302 kb on + strand at 4680.303 kb on - strand at 4680.303 kb on - strand at 4680.303 kb on - strand at 4680.303 kb on - strand at 4680.538 kb on - strand, within AO356_21040 at 4680.660 kb on - strand, within AO356_21040 at 4680.709 kb on - strand, within AO356_21040 at 4680.787 kb on + strand, within AO356_21040 at 4680.787 kb on + strand, within AO356_21040 at 4680.788 kb on - strand, within AO356_21040 at 4680.788 kb on - strand, within AO356_21040 at 4680.788 kb on - strand, within AO356_21040 at 4680.792 kb on + strand, within AO356_21040 at 4680.792 kb on + strand, within AO356_21040 at 4680.793 kb on - strand, within AO356_21040 at 4681.014 kb on + strand at 4681.014 kb on + strand at 4681.121 kb on + strand at 4681.122 kb on - strand at 4681.126 kb on + strand at 4681.126 kb on + strand at 4681.127 kb on - strand at 4681.127 kb on - strand at 4681.127 kb on - strand at 4681.177 kb on + strand at 4681.178 kb on - strand at 4681.308 kb on - strand, within AO356_21045
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,679,086 + -0.5 4,679,124 - +0.6 4,679,136 + -1.4 4,679,137 - +0.9 4,679,173 + -1.5 4,679,173 + -0.4 4,679,174 - +0.2 4,679,180 - +0.1 4,679,237 + +0.6 4,679,275 + -0.5 4,679,276 - -0.4 4,679,276 - +0.2 4,679,660 + AO356_21030 0.49 +0.7 4,679,760 + AO356_21030 0.63 -2.9 4,679,775 + AO356_21030 0.65 -0.7 4,679,775 + AO356_21030 0.65 -0.5 4,679,776 - AO356_21030 0.65 -0.4 4,679,989 + +1.1 4,679,989 + +0.0 4,680,088 + AO356_21035 0.10 -2.1 4,680,155 + AO356_21035 0.36 -0.4 4,680,155 + AO356_21035 0.36 +0.0 4,680,155 + AO356_21035 0.36 -2.9 4,680,156 - AO356_21035 0.36 -0.4 4,680,174 + AO356_21035 0.43 -1.5 4,680,175 - AO356_21035 0.44 -2.6 4,680,175 - AO356_21035 0.44 -1.1 4,680,188 + AO356_21035 0.49 -1.0 4,680,189 - AO356_21035 0.49 -2.0 4,680,201 - AO356_21035 0.54 +0.2 4,680,207 + AO356_21035 0.56 -0.6 4,680,228 - AO356_21035 0.64 -1.1 4,680,228 - AO356_21035 0.64 +0.4 4,680,281 + AO356_21035 0.85 -0.9 4,680,302 + -1.1 4,680,303 - +0.3 4,680,303 - +0.6 4,680,303 - -0.8 4,680,303 - +0.7 4,680,538 - AO356_21040 0.21 -0.5 4,680,660 - AO356_21040 0.39 -0.1 4,680,709 - AO356_21040 0.46 +1.0 4,680,787 + AO356_21040 0.57 +0.2 4,680,787 + AO356_21040 0.57 -0.8 4,680,788 - AO356_21040 0.58 +0.4 4,680,788 - AO356_21040 0.58 +0.7 4,680,788 - AO356_21040 0.58 -0.3 4,680,792 + AO356_21040 0.58 +0.7 4,680,792 + AO356_21040 0.58 -0.1 4,680,793 - AO356_21040 0.58 +0.4 4,681,014 + -0.1 4,681,014 + -1.2 4,681,121 + +0.3 4,681,122 - +1.4 4,681,126 + -0.7 4,681,126 + +0.6 4,681,127 - +0.4 4,681,127 - +0.5 4,681,127 - +0.2 4,681,177 + +0.1 4,681,178 - +0.8 4,681,308 - AO356_21045 0.13 +0.1
Or see this region's nucleotide sequence