Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20875 and AO356_20880 are separated by 52 nucleotides AO356_20880 and AO356_20885 are separated by 381 nucleotides
AO356_20875: AO356_20875 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 4,650,295 to 4,652,886
_20875
AO356_20880: AO356_20880 - 3-methylitaconate isomerase, at 4,652,939 to 4,654,132
_20880
AO356_20885: AO356_20885 - metal ABC transporter substrate-binding protein, at 4,654,514 to 4,655,407
_20885
Position (kb)
4652
4653
4654
4655 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.036 kb on - strand, within AO356_20875 at 4652.089 kb on + strand, within AO356_20875 at 4652.089 kb on + strand, within AO356_20875 at 4652.090 kb on - strand, within AO356_20875 at 4652.113 kb on + strand, within AO356_20875 at 4652.113 kb on + strand, within AO356_20875 at 4652.113 kb on + strand, within AO356_20875 at 4652.113 kb on + strand, within AO356_20875 at 4652.114 kb on - strand, within AO356_20875 at 4652.114 kb on - strand, within AO356_20875 at 4652.114 kb on - strand, within AO356_20875 at 4652.264 kb on - strand, within AO356_20875 at 4652.306 kb on - strand, within AO356_20875 at 4652.470 kb on + strand, within AO356_20875 at 4652.470 kb on + strand, within AO356_20875 at 4652.470 kb on + strand, within AO356_20875 at 4652.471 kb on - strand, within AO356_20875 at 4652.471 kb on - strand, within AO356_20875 at 4652.471 kb on - strand, within AO356_20875 at 4652.471 kb on - strand, within AO356_20875 at 4652.471 kb on - strand, within AO356_20875 at 4652.516 kb on - strand, within AO356_20875 at 4652.698 kb on + strand at 4652.821 kb on + strand at 4652.821 kb on + strand at 4652.821 kb on + strand at 4652.821 kb on + strand at 4652.822 kb on - strand at 4652.931 kb on + strand at 4652.931 kb on + strand at 4652.931 kb on + strand at 4652.932 kb on - strand at 4652.932 kb on - strand at 4652.932 kb on - strand at 4652.975 kb on + strand at 4652.975 kb on + strand at 4652.975 kb on + strand at 4652.975 kb on + strand at 4652.976 kb on - strand at 4652.976 kb on - strand at 4652.976 kb on - strand at 4653.194 kb on + strand, within AO356_20880 at 4653.194 kb on + strand, within AO356_20880 at 4653.339 kb on + strand, within AO356_20880 at 4653.801 kb on - strand, within AO356_20880 at 4654.175 kb on + strand at 4654.183 kb on + strand at 4654.183 kb on + strand at 4654.183 kb on + strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.332 kb on - strand at 4654.466 kb on + strand at 4654.466 kb on + strand at 4654.553 kb on - strand at 4654.553 kb on - strand at 4654.553 kb on - strand at 4654.553 kb on - strand at 4654.696 kb on + strand, within AO356_20885 at 4655.109 kb on + strand, within AO356_20885
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,652,036 - AO356_20875 0.67 +0.7 4,652,036 - AO356_20875 0.67 -1.6 4,652,036 - AO356_20875 0.67 -2.1 4,652,036 - AO356_20875 0.67 -1.0 4,652,036 - AO356_20875 0.67 -0.4 4,652,036 - AO356_20875 0.67 -0.2 4,652,036 - AO356_20875 0.67 +0.8 4,652,089 + AO356_20875 0.69 +2.6 4,652,089 + AO356_20875 0.69 +1.2 4,652,090 - AO356_20875 0.69 -1.0 4,652,113 + AO356_20875 0.70 -1.2 4,652,113 + AO356_20875 0.70 +1.3 4,652,113 + AO356_20875 0.70 +1.0 4,652,113 + AO356_20875 0.70 +0.9 4,652,114 - AO356_20875 0.70 -0.8 4,652,114 - AO356_20875 0.70 +2.2 4,652,114 - AO356_20875 0.70 +2.4 4,652,264 - AO356_20875 0.76 +1.3 4,652,306 - AO356_20875 0.78 +0.4 4,652,470 + AO356_20875 0.84 +1.0 4,652,470 + AO356_20875 0.84 +1.8 4,652,470 + AO356_20875 0.84 +0.4 4,652,471 - AO356_20875 0.84 +0.8 4,652,471 - AO356_20875 0.84 +1.6 4,652,471 - AO356_20875 0.84 -1.8 4,652,471 - AO356_20875 0.84 -2.3 4,652,471 - AO356_20875 0.84 -1.3 4,652,516 - AO356_20875 0.86 -0.5 4,652,698 + +0.8 4,652,821 + -0.1 4,652,821 + +0.6 4,652,821 + +0.7 4,652,821 + -0.1 4,652,822 - -1.4 4,652,931 + -1.4 4,652,931 + +0.1 4,652,931 + -3.0 4,652,932 - +1.3 4,652,932 - -1.3 4,652,932 - +0.8 4,652,975 + +0.2 4,652,975 + -1.1 4,652,975 + -1.2 4,652,975 + -0.1 4,652,976 - +1.2 4,652,976 - +0.6 4,652,976 - +0.1 4,653,194 + AO356_20880 0.21 +1.6 4,653,194 + AO356_20880 0.21 +0.7 4,653,339 + AO356_20880 0.34 +0.6 4,653,801 - AO356_20880 0.72 +1.7 4,654,175 + -0.8 4,654,183 + -0.4 4,654,183 + -1.4 4,654,183 + -0.7 4,654,332 - +0.4 4,654,332 - +1.3 4,654,332 - +0.5 4,654,332 - -0.4 4,654,332 - -1.0 4,654,332 - -0.2 4,654,332 - +1.3 4,654,332 - +0.3 4,654,332 - -0.2 4,654,332 - +0.2 4,654,332 - -0.5 4,654,332 - +0.9 4,654,332 - -0.1 4,654,332 - +0.7 4,654,332 - +0.3 4,654,332 - +1.2 4,654,332 - +2.3 4,654,332 - +0.7 4,654,332 - -0.3 4,654,332 - -2.5 4,654,332 - +0.5 4,654,332 - +0.2 4,654,466 + +1.0 4,654,466 + -0.2 4,654,553 - +1.2 4,654,553 - +1.0 4,654,553 - +1.2 4,654,553 - -0.4 4,654,696 + AO356_20885 0.20 +1.3 4,655,109 + AO356_20885 0.67 +0.3
Or see this region's nucleotide sequence