Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20860

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20850 and AO356_20855 are separated by 5 nucleotidesAO356_20855 and AO356_20860 are separated by 283 nucleotidesAO356_20860 and AO356_20865 overlap by 4 nucleotidesAO356_20865 and AO356_20870 are separated by 41 nucleotides AO356_20850: AO356_20850 - hypothetical protein, at 4,644,974 to 4,646,506 _20850 AO356_20855: AO356_20855 - ATP-dependent zinc protease, at 4,646,512 to 4,647,048 _20855 AO356_20860: AO356_20860 - GntR family transcriptional regulator, at 4,647,332 to 4,648,045 _20860 AO356_20865: AO356_20865 - 2-methylisocitrate lyase, at 4,648,042 to 4,648,926 _20865 AO356_20870: AO356_20870 - 2-methylcitrate synthase, at 4,648,968 to 4,650,095 _20870 Position (kb) 4647 4648 4649Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4646.434 kb on - strandat 4646.494 kb on + strandat 4646.513 kb on + strandat 4646.514 kb on - strandat 4646.514 kb on - strandat 4646.561 kb on + strandat 4646.561 kb on + strandat 4646.562 kb on - strandat 4646.562 kb on - strandat 4646.562 kb on - strandat 4646.565 kb on + strandat 4646.566 kb on - strand, within AO356_20855at 4646.566 kb on - strand, within AO356_20855at 4646.566 kb on - strand, within AO356_20855at 4646.628 kb on - strand, within AO356_20855at 4646.720 kb on + strand, within AO356_20855at 4646.720 kb on + strand, within AO356_20855at 4646.744 kb on + strand, within AO356_20855at 4646.744 kb on + strand, within AO356_20855at 4646.954 kb on + strand, within AO356_20855at 4647.017 kb on + strandat 4647.017 kb on + strandat 4647.017 kb on + strandat 4647.018 kb on - strandat 4647.031 kb on + strandat 4647.031 kb on + strandat 4647.032 kb on - strandat 4647.048 kb on + strandat 4647.048 kb on + strandat 4647.048 kb on + strandat 4647.048 kb on + strandat 4647.048 kb on + strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.049 kb on - strandat 4647.095 kb on + strandat 4647.096 kb on - strandat 4647.096 kb on - strandat 4647.129 kb on + strandat 4647.130 kb on - strandat 4647.148 kb on - strandat 4647.162 kb on - strandat 4647.162 kb on - strandat 4647.162 kb on - strandat 4647.238 kb on + strandat 4647.278 kb on + strandat 4647.278 kb on + strandat 4647.279 kb on - strandat 4647.279 kb on - strandat 4647.279 kb on - strandat 4647.479 kb on + strand, within AO356_20860at 4647.479 kb on + strand, within AO356_20860at 4647.479 kb on + strand, within AO356_20860at 4647.480 kb on - strand, within AO356_20860at 4647.606 kb on - strand, within AO356_20860at 4647.740 kb on + strand, within AO356_20860at 4647.743 kb on + strand, within AO356_20860at 4647.743 kb on + strand, within AO356_20860at 4647.743 kb on + strand, within AO356_20860at 4647.743 kb on + strand, within AO356_20860at 4647.744 kb on - strand, within AO356_20860at 4647.833 kb on + strand, within AO356_20860at 4647.834 kb on - strand, within AO356_20860at 4647.957 kb on + strand, within AO356_20860at 4647.957 kb on + strand, within AO356_20860at 4648.168 kb on + strand, within AO356_20865at 4648.168 kb on + strand, within AO356_20865at 4648.169 kb on - strand, within AO356_20865at 4648.169 kb on - strand, within AO356_20865at 4648.253 kb on + strand, within AO356_20865at 4648.253 kb on + strand, within AO356_20865at 4648.254 kb on - strand, within AO356_20865at 4648.260 kb on + strand, within AO356_20865at 4648.381 kb on - strand, within AO356_20865at 4648.462 kb on - strand, within AO356_20865at 4648.627 kb on + strand, within AO356_20865at 4648.627 kb on + strand, within AO356_20865at 4648.627 kb on + strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.628 kb on - strand, within AO356_20865at 4648.700 kb on - strand, within AO356_20865at 4648.792 kb on + strand, within AO356_20865at 4648.793 kb on - strand, within AO356_20865at 4648.836 kb on + strand, within AO356_20865at 4648.836 kb on + strand, within AO356_20865at 4648.837 kb on - strand, within AO356_20865at 4648.837 kb on - strand, within AO356_20865at 4648.839 kb on + strandat 4648.839 kb on + strandat 4648.839 kb on + strandat 4648.839 kb on + strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.840 kb on - strandat 4648.876 kb on + strandat 4648.925 kb on - strandat 4648.941 kb on - strandat 4648.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,646,434 - -1.1
4,646,494 + -0.5
4,646,513 + -2.4
4,646,514 - -0.1
4,646,514 - -0.9
4,646,561 + -0.2
4,646,561 + -0.2
4,646,562 - -1.7
4,646,562 - -0.3
4,646,562 - -0.4
4,646,565 + +1.2
4,646,566 - AO356_20855 0.10 -0.6
4,646,566 - AO356_20855 0.10 +0.2
4,646,566 - AO356_20855 0.10 -0.6
4,646,628 - AO356_20855 0.22 +0.5
4,646,720 + AO356_20855 0.39 -1.8
4,646,720 + AO356_20855 0.39 -1.8
4,646,744 + AO356_20855 0.43 +0.2
4,646,744 + AO356_20855 0.43 -0.4
4,646,954 + AO356_20855 0.82 +0.6
4,647,017 + -0.4
4,647,017 + -2.3
4,647,017 + -0.9
4,647,018 - -0.8
4,647,031 + +1.9
4,647,031 + -2.2
4,647,032 - +0.0
4,647,048 + -0.7
4,647,048 + -2.2
4,647,048 + -0.4
4,647,048 + -0.2
4,647,048 + -0.8
4,647,049 - +0.5
4,647,049 - -0.9
4,647,049 - +0.5
4,647,049 - +0.9
4,647,049 - -0.8
4,647,049 - -2.0
4,647,049 - +1.1
4,647,049 - +0.6
4,647,095 + -1.3
4,647,096 - -1.6
4,647,096 - +2.3
4,647,129 + -1.7
4,647,130 - -0.9
4,647,148 - +0.9
4,647,162 - -0.6
4,647,162 - +0.1
4,647,162 - +0.7
4,647,238 + -1.7
4,647,278 + +2.4
4,647,278 + -1.9
4,647,279 - +0.5
4,647,279 - +0.1
4,647,279 - +0.2
4,647,479 + AO356_20860 0.21 +1.4
4,647,479 + AO356_20860 0.21 -1.1
4,647,479 + AO356_20860 0.21 -0.4
4,647,480 - AO356_20860 0.21 +0.4
4,647,606 - AO356_20860 0.38 -2.6
4,647,740 + AO356_20860 0.57 +1.5
4,647,743 + AO356_20860 0.58 -0.9
4,647,743 + AO356_20860 0.58 -1.1
4,647,743 + AO356_20860 0.58 +0.4
4,647,743 + AO356_20860 0.58 -1.2
4,647,744 - AO356_20860 0.58 -0.1
4,647,833 + AO356_20860 0.70 +0.3
4,647,834 - AO356_20860 0.70 +0.5
4,647,957 + AO356_20860 0.88 -0.9
4,647,957 + AO356_20860 0.88 -2.2
4,648,168 + AO356_20865 0.14 -2.2
4,648,168 + AO356_20865 0.14 +0.8
4,648,169 - AO356_20865 0.14 -0.2
4,648,169 - AO356_20865 0.14 -1.6
4,648,253 + AO356_20865 0.24 +0.7
4,648,253 + AO356_20865 0.24 -0.3
4,648,254 - AO356_20865 0.24 +1.6
4,648,260 + AO356_20865 0.25 +0.1
4,648,381 - AO356_20865 0.38 -0.2
4,648,462 - AO356_20865 0.47 +0.2
4,648,627 + AO356_20865 0.66 +0.6
4,648,627 + AO356_20865 0.66 -0.1
4,648,627 + AO356_20865 0.66 +0.6
4,648,628 - AO356_20865 0.66 +0.5
4,648,628 - AO356_20865 0.66 +1.0
4,648,628 - AO356_20865 0.66 -0.0
4,648,628 - AO356_20865 0.66 -0.4
4,648,628 - AO356_20865 0.66 +0.4
4,648,628 - AO356_20865 0.66 -0.2
4,648,628 - AO356_20865 0.66 +1.5
4,648,628 - AO356_20865 0.66 -0.4
4,648,628 - AO356_20865 0.66 +0.4
4,648,628 - AO356_20865 0.66 +0.2
4,648,700 - AO356_20865 0.74 +1.4
4,648,792 + AO356_20865 0.85 +1.2
4,648,793 - AO356_20865 0.85 +1.4
4,648,836 + AO356_20865 0.90 -0.4
4,648,836 + AO356_20865 0.90 +0.1
4,648,837 - AO356_20865 0.90 -0.3
4,648,837 - AO356_20865 0.90 +0.4
4,648,839 + -0.3
4,648,839 + -0.0
4,648,839 + -0.7
4,648,839 + -1.3
4,648,840 - -3.1
4,648,840 - +0.4
4,648,840 - +0.9
4,648,840 - -0.1
4,648,840 - -0.6
4,648,840 - +0.5
4,648,840 - +0.7
4,648,840 - +0.7
4,648,876 + +0.6
4,648,925 - +0.4
4,648,941 - -1.0
4,648,984 + -1.3

Or see this region's nucleotide sequence