Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20125

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20120 and AO356_20125 are separated by 699 nucleotidesAO356_20125 and AO356_20130 overlap by 11 nucleotidesAO356_20130 and AO356_20135 are separated by 20 nucleotides AO356_20120: AO356_20120 - ribonuclease E, at 4,501,334 to 4,504,525 _20120 AO356_20125: AO356_20125 - 23S rRNA pseudouridylate synthase, at 4,505,225 to 4,506,181 _20125 AO356_20130: AO356_20130 - HAD family hydrolase, at 4,506,171 to 4,506,833 _20130 AO356_20135: AO356_20135 - peptidase S49, at 4,506,854 to 4,507,843 _20135 Position (kb) 4505 4506 4507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4504.856 kb on - strandat 4504.856 kb on - strandat 4504.894 kb on - strandat 4505.059 kb on - strandat 4505.063 kb on - strandat 4505.212 kb on + strandat 4505.233 kb on + strandat 4505.233 kb on + strandat 4505.233 kb on + strandat 4505.233 kb on + strandat 4505.234 kb on - strandat 4505.234 kb on - strandat 4505.234 kb on - strandat 4505.234 kb on - strandat 4505.283 kb on - strandat 4505.283 kb on - strandat 4505.405 kb on + strand, within AO356_20125at 4505.406 kb on - strand, within AO356_20125at 4505.406 kb on - strand, within AO356_20125at 4505.406 kb on - strand, within AO356_20125at 4505.756 kb on + strand, within AO356_20125at 4505.756 kb on + strand, within AO356_20125at 4505.757 kb on - strand, within AO356_20125at 4505.757 kb on - strand, within AO356_20125at 4505.757 kb on - strand, within AO356_20125at 4505.757 kb on - strand, within AO356_20125at 4505.975 kb on - strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.080 kb on + strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.081 kb on - strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.082 kb on + strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.083 kb on - strand, within AO356_20125at 4506.348 kb on + strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.394 kb on - strand, within AO356_20130at 4506.405 kb on + strand, within AO356_20130at 4506.406 kb on - strand, within AO356_20130at 4506.455 kb on + strand, within AO356_20130at 4506.558 kb on + strand, within AO356_20130at 4506.625 kb on + strand, within AO356_20130at 4506.732 kb on + strand, within AO356_20130at 4506.733 kb on - strand, within AO356_20130at 4506.832 kb on - strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.853 kb on + strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4506.854 kb on - strandat 4507.007 kb on + strand, within AO356_20135at 4507.007 kb on + strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.008 kb on - strand, within AO356_20135at 4507.079 kb on + strand, within AO356_20135at 4507.079 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.141 kb on + strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135at 4507.142 kb on - strand, within AO356_20135

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,504,856 - +0.7
4,504,856 - -3.1
4,504,894 - +0.8
4,505,059 - +1.6
4,505,063 - +1.6
4,505,212 + +0.0
4,505,233 + +0.8
4,505,233 + -1.1
4,505,233 + +0.1
4,505,233 + +0.9
4,505,234 - +2.2
4,505,234 - +0.3
4,505,234 - +2.9
4,505,234 - +1.5
4,505,283 - +0.8
4,505,283 - +1.5
4,505,405 + AO356_20125 0.19 +0.7
4,505,406 - AO356_20125 0.19 +2.4
4,505,406 - AO356_20125 0.19 +0.7
4,505,406 - AO356_20125 0.19 +1.3
4,505,756 + AO356_20125 0.55 +1.6
4,505,756 + AO356_20125 0.55 +1.9
4,505,757 - AO356_20125 0.56 +0.7
4,505,757 - AO356_20125 0.56 +0.3
4,505,757 - AO356_20125 0.56 -0.0
4,505,757 - AO356_20125 0.56 +1.6
4,505,975 - AO356_20125 0.78 +0.6
4,506,080 + AO356_20125 0.89 -0.7
4,506,080 + AO356_20125 0.89 +0.9
4,506,080 + AO356_20125 0.89 +0.3
4,506,080 + AO356_20125 0.89 +0.8
4,506,080 + AO356_20125 0.89 +0.0
4,506,080 + AO356_20125 0.89 +1.5
4,506,081 - AO356_20125 0.89 +0.3
4,506,081 - AO356_20125 0.89 +1.0
4,506,081 - AO356_20125 0.89 +0.8
4,506,081 - AO356_20125 0.89 +1.2
4,506,081 - AO356_20125 0.89 -0.1
4,506,081 - AO356_20125 0.89 +1.9
4,506,081 - AO356_20125 0.89 +1.1
4,506,081 - AO356_20125 0.89 +1.3
4,506,081 - AO356_20125 0.89 +1.1
4,506,081 - AO356_20125 0.89 -0.2
4,506,081 - AO356_20125 0.89 +0.4
4,506,082 + AO356_20125 0.90 +0.1
4,506,082 + AO356_20125 0.90 -0.1
4,506,082 + AO356_20125 0.90 +3.6
4,506,082 + AO356_20125 0.90 +1.3
4,506,082 + AO356_20125 0.90 -0.3
4,506,083 - AO356_20125 0.90 -0.0
4,506,083 - AO356_20125 0.90 +1.6
4,506,083 - AO356_20125 0.90 +2.0
4,506,083 - AO356_20125 0.90 +1.5
4,506,348 + AO356_20130 0.27 +1.4
4,506,394 - AO356_20130 0.34 +0.0
4,506,394 - AO356_20130 0.34 -0.7
4,506,394 - AO356_20130 0.34 +1.6
4,506,405 + AO356_20130 0.35 -0.2
4,506,406 - AO356_20130 0.35 +0.2
4,506,455 + AO356_20130 0.43 -1.4
4,506,558 + AO356_20130 0.58 +0.4
4,506,625 + AO356_20130 0.68 +0.0
4,506,732 + AO356_20130 0.85 -0.4
4,506,733 - AO356_20130 0.85 -0.9
4,506,832 - -0.2
4,506,853 + +0.7
4,506,853 + -0.2
4,506,853 + +0.7
4,506,853 + -1.1
4,506,853 + +0.2
4,506,853 + -1.1
4,506,854 - +0.4
4,506,854 - +1.5
4,506,854 - -0.4
4,506,854 - +1.6
4,506,854 - -0.6
4,506,854 - -0.9
4,506,854 - +0.7
4,506,854 - -1.4
4,506,854 - +1.6
4,507,007 + AO356_20135 0.15 -1.2
4,507,007 + AO356_20135 0.15 -1.4
4,507,008 - AO356_20135 0.16 -0.1
4,507,008 - AO356_20135 0.16 +1.2
4,507,008 - AO356_20135 0.16 -0.2
4,507,079 + AO356_20135 0.23 +0.2
4,507,079 + AO356_20135 0.23 -2.1
4,507,141 + AO356_20135 0.29 -0.6
4,507,141 + AO356_20135 0.29 +1.4
4,507,141 + AO356_20135 0.29 -0.1
4,507,142 - AO356_20135 0.29 +0.3
4,507,142 - AO356_20135 0.29 +0.7
4,507,142 - AO356_20135 0.29 -2.1

Or see this region's nucleotide sequence