Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19595 and AO356_19600 are separated by 114 nucleotides AO356_19600 and AO356_19605 overlap by 11 nucleotides
AO356_19595: AO356_19595 - urea transporter, at 4,393,527 to 4,394,426
_19595
AO356_19600: AO356_19600 - pyruvate kinase, at 4,394,541 to 4,395,956
_19600
AO356_19605: AO356_19605 - hydroxypyruvate reductase, at 4,395,946 to 4,397,226
_19605
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4393.554 kb on + strand at 4393.555 kb on - strand at 4393.763 kb on + strand, within AO356_19595 at 4394.053 kb on + strand, within AO356_19595 at 4394.203 kb on + strand, within AO356_19595 at 4394.203 kb on + strand, within AO356_19595 at 4394.204 kb on - strand, within AO356_19595 at 4394.204 kb on - strand, within AO356_19595 at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.429 kb on + strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.430 kb on - strand at 4394.533 kb on + strand at 4394.542 kb on + strand at 4394.543 kb on - strand at 4394.543 kb on - strand at 4394.618 kb on + strand at 4394.619 kb on - strand at 4394.619 kb on - strand at 4394.830 kb on + strand, within AO356_19600 at 4394.830 kb on + strand, within AO356_19600 at 4394.830 kb on + strand, within AO356_19600 at 4394.831 kb on - strand, within AO356_19600 at 4394.831 kb on - strand, within AO356_19600 at 4394.944 kb on + strand, within AO356_19600 at 4394.945 kb on - strand, within AO356_19600 at 4394.945 kb on - strand, within AO356_19600 at 4395.773 kb on - strand, within AO356_19600 at 4395.944 kb on + strand at 4396.050 kb on - strand at 4396.050 kb on - strand at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.615 kb on - strand, within AO356_19605 at 4396.685 kb on + strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.692 kb on - strand, within AO356_19605
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,393,554 + +0.2 4,393,555 - +1.7 4,393,763 + AO356_19595 0.26 +1.1 4,394,053 + AO356_19595 0.58 -0.0 4,394,203 + AO356_19595 0.75 -2.0 4,394,203 + AO356_19595 0.75 -0.5 4,394,204 - AO356_19595 0.75 -0.7 4,394,204 - AO356_19595 0.75 +1.2 4,394,429 + -0.3 4,394,429 + -0.8 4,394,429 + -0.0 4,394,429 + -0.3 4,394,429 + +0.0 4,394,429 + +0.5 4,394,429 + +0.2 4,394,429 + +0.3 4,394,429 + +1.0 4,394,429 + -2.1 4,394,429 + +1.2 4,394,429 + +0.3 4,394,430 - +1.1 4,394,430 - +0.7 4,394,430 - +0.7 4,394,430 - +0.5 4,394,430 - +1.8 4,394,430 - -0.5 4,394,430 - -2.8 4,394,430 - -1.1 4,394,430 - -0.6 4,394,430 - -0.5 4,394,430 - -0.8 4,394,430 - -0.0 4,394,430 - -0.5 4,394,533 + -0.4 4,394,542 + -1.5 4,394,543 - +1.3 4,394,543 - -0.9 4,394,618 + +0.1 4,394,619 - -0.0 4,394,619 - +0.4 4,394,830 + AO356_19600 0.20 +0.4 4,394,830 + AO356_19600 0.20 -0.7 4,394,830 + AO356_19600 0.20 +0.1 4,394,831 - AO356_19600 0.20 -0.7 4,394,831 - AO356_19600 0.20 -0.3 4,394,944 + AO356_19600 0.28 -1.3 4,394,945 - AO356_19600 0.29 +0.9 4,394,945 - AO356_19600 0.29 +0.5 4,395,773 - AO356_19600 0.87 -0.1 4,395,944 + +1.8 4,396,050 - -0.0 4,396,050 - -0.5 4,396,190 + AO356_19605 0.19 -0.2 4,396,190 + AO356_19605 0.19 +1.5 4,396,190 + AO356_19605 0.19 +0.3 4,396,190 + AO356_19605 0.19 -0.4 4,396,190 + AO356_19605 0.19 +0.9 4,396,190 + AO356_19605 0.19 -0.3 4,396,190 + AO356_19605 0.19 -0.4 4,396,191 - AO356_19605 0.19 +0.7 4,396,191 - AO356_19605 0.19 +1.1 4,396,614 + AO356_19605 0.52 -2.0 4,396,614 + AO356_19605 0.52 -0.9 4,396,615 - AO356_19605 0.52 -1.3 4,396,685 + AO356_19605 0.58 +0.2 4,396,686 - AO356_19605 0.58 -1.4 4,396,686 - AO356_19605 0.58 +0.0 4,396,691 + AO356_19605 0.58 +0.4 4,396,691 + AO356_19605 0.58 +0.4 4,396,691 + AO356_19605 0.58 -1.4 4,396,691 + AO356_19605 0.58 -0.6 4,396,692 - AO356_19605 0.58 -0.1
Or see this region's nucleotide sequence