Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19540 and AO356_19545 are separated by 34 nucleotides AO356_19545 and AO356_19550 are separated by 34 nucleotides AO356_19550 and AO356_19555 are separated by 158 nucleotides
AO356_19540: AO356_19540 - chorismate synthase, at 4,382,965 to 4,384,056
_19540
AO356_19545: AO356_19545 - MFS transporter, at 4,384,091 to 4,385,236
_19545
AO356_19550: AO356_19550 - acireductone dioxygenase, at 4,385,271 to 4,385,816
_19550
AO356_19555: AO356_19555 - hypothetical protein, at 4,385,975 to 4,386,253
_19555
Position (kb)
4384
4385
4386 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4384.127 kb on + strand at 4384.127 kb on + strand at 4384.127 kb on + strand at 4384.128 kb on - strand at 4384.128 kb on - strand at 4384.136 kb on + strand at 4384.178 kb on + strand at 4384.179 kb on - strand at 4384.284 kb on - strand, within AO356_19545 at 4384.284 kb on - strand, within AO356_19545 at 4384.367 kb on + strand, within AO356_19545 at 4384.368 kb on - strand, within AO356_19545 at 4384.368 kb on - strand, within AO356_19545 at 4384.368 kb on - strand, within AO356_19545 at 4384.565 kb on + strand, within AO356_19545 at 4384.566 kb on - strand, within AO356_19545 at 4384.566 kb on - strand, within AO356_19545 at 4384.706 kb on + strand, within AO356_19545 at 4384.707 kb on - strand, within AO356_19545 at 4384.707 kb on - strand, within AO356_19545 at 4384.707 kb on - strand, within AO356_19545 at 4384.745 kb on + strand, within AO356_19545 at 4384.745 kb on + strand, within AO356_19545 at 4384.746 kb on - strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4384.748 kb on + strand, within AO356_19545 at 4385.078 kb on + strand, within AO356_19545 at 4385.078 kb on + strand, within AO356_19545 at 4385.078 kb on + strand, within AO356_19545 at 4385.079 kb on - strand, within AO356_19545 at 4385.120 kb on + strand, within AO356_19545 at 4385.121 kb on - strand, within AO356_19545 at 4385.121 kb on - strand, within AO356_19545 at 4385.201 kb on - strand at 4385.250 kb on + strand at 4385.290 kb on - strand at 4385.442 kb on + strand, within AO356_19550 at 4385.481 kb on + strand, within AO356_19550 at 4385.559 kb on + strand, within AO356_19550 at 4385.581 kb on + strand, within AO356_19550 at 4385.612 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.631 kb on + strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.632 kb on - strand, within AO356_19550 at 4385.637 kb on + strand, within AO356_19550 at 4385.637 kb on + strand, within AO356_19550 at 4385.637 kb on + strand, within AO356_19550 at 4385.637 kb on + strand, within AO356_19550 at 4385.983 kb on + strand at 4385.984 kb on - strand at 4385.988 kb on + strand at 4385.988 kb on + strand at 4385.988 kb on + strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4385.989 kb on - strand at 4386.120 kb on + strand, within AO356_19555 at 4386.121 kb on - strand, within AO356_19555 at 4386.211 kb on - strand, within AO356_19555
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,384,127 + +1.8 4,384,127 + +1.0 4,384,127 + -0.2 4,384,128 - +0.3 4,384,128 - -0.2 4,384,136 + -0.4 4,384,178 + -0.4 4,384,179 - +0.8 4,384,284 - AO356_19545 0.17 -0.4 4,384,284 - AO356_19545 0.17 -1.0 4,384,367 + AO356_19545 0.24 -1.8 4,384,368 - AO356_19545 0.24 +0.7 4,384,368 - AO356_19545 0.24 -0.5 4,384,368 - AO356_19545 0.24 -1.7 4,384,565 + AO356_19545 0.41 +0.0 4,384,566 - AO356_19545 0.41 -0.5 4,384,566 - AO356_19545 0.41 +1.8 4,384,706 + AO356_19545 0.54 -1.0 4,384,707 - AO356_19545 0.54 +0.8 4,384,707 - AO356_19545 0.54 +0.2 4,384,707 - AO356_19545 0.54 +0.4 4,384,745 + AO356_19545 0.57 +0.4 4,384,745 + AO356_19545 0.57 -0.5 4,384,746 - AO356_19545 0.57 +0.3 4,384,748 + AO356_19545 0.57 +0.6 4,384,748 + AO356_19545 0.57 -3.3 4,384,748 + AO356_19545 0.57 +0.1 4,384,748 + AO356_19545 0.57 +0.9 4,384,748 + AO356_19545 0.57 +0.1 4,384,748 + AO356_19545 0.57 +0.3 4,384,748 + AO356_19545 0.57 -0.3 4,384,748 + AO356_19545 0.57 -1.1 4,385,078 + AO356_19545 0.86 +1.1 4,385,078 + AO356_19545 0.86 +0.1 4,385,078 + AO356_19545 0.86 +0.7 4,385,079 - AO356_19545 0.86 -1.1 4,385,120 + AO356_19545 0.90 +0.4 4,385,121 - AO356_19545 0.90 -0.2 4,385,121 - AO356_19545 0.90 +0.5 4,385,201 - +0.8 4,385,250 + +0.9 4,385,290 - -0.1 4,385,442 + AO356_19550 0.31 +0.9 4,385,481 + AO356_19550 0.38 +0.7 4,385,559 + AO356_19550 0.53 +0.2 4,385,581 + AO356_19550 0.57 +1.2 4,385,612 + AO356_19550 0.62 -0.0 4,385,631 + AO356_19550 0.66 +0.5 4,385,631 + AO356_19550 0.66 -0.1 4,385,631 + AO356_19550 0.66 -0.0 4,385,631 + AO356_19550 0.66 -0.8 4,385,631 + AO356_19550 0.66 -0.6 4,385,631 + AO356_19550 0.66 +1.0 4,385,631 + AO356_19550 0.66 +1.4 4,385,631 + AO356_19550 0.66 +1.1 4,385,631 + AO356_19550 0.66 +0.4 4,385,632 - AO356_19550 0.66 +1.5 4,385,632 - AO356_19550 0.66 +1.7 4,385,632 - AO356_19550 0.66 +0.9 4,385,632 - AO356_19550 0.66 +0.6 4,385,632 - AO356_19550 0.66 +0.5 4,385,632 - AO356_19550 0.66 +0.6 4,385,632 - AO356_19550 0.66 +0.9 4,385,632 - AO356_19550 0.66 -1.8 4,385,632 - AO356_19550 0.66 +0.8 4,385,632 - AO356_19550 0.66 +1.0 4,385,637 + AO356_19550 0.67 -0.6 4,385,637 + AO356_19550 0.67 -0.0 4,385,637 + AO356_19550 0.67 -1.5 4,385,637 + AO356_19550 0.67 +0.4 4,385,983 + +0.0 4,385,984 - -1.9 4,385,988 + +0.9 4,385,988 + +0.7 4,385,988 + -0.5 4,385,989 - +1.2 4,385,989 - +0.0 4,385,989 - -0.7 4,385,989 - -0.5 4,385,989 - -0.0 4,385,989 - +1.0 4,385,989 - -1.5 4,385,989 - -0.5 4,385,989 - +0.6 4,386,120 + AO356_19555 0.52 +0.5 4,386,121 - AO356_19555 0.52 -0.1 4,386,211 - AO356_19555 0.85 -0.7
Or see this region's nucleotide sequence