Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19390

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19385 and AO356_19390 are separated by 7 nucleotidesAO356_19390 and AO356_19395 are separated by 213 nucleotides AO356_19385: AO356_19385 - MFS transporter, at 4,351,574 to 4,352,302 _19385 AO356_19390: AO356_19390 - hypothetical protein, at 4,352,310 to 4,352,492 _19390 AO356_19395: AO356_19395 - aminopeptidase, at 4,352,706 to 4,353,995 _19395 Position (kb) 4352 4353Strain fitness (log2 ratio) -3 -2 -1 0 1at 4351.349 kb on + strandat 4351.379 kb on - strandat 4351.385 kb on - strandat 4351.396 kb on - strandat 4351.406 kb on + strandat 4351.407 kb on - strandat 4351.490 kb on - strandat 4351.490 kb on - strandat 4351.490 kb on - strandat 4351.554 kb on - strandat 4351.562 kb on + strandat 4351.562 kb on + strandat 4351.562 kb on + strandat 4351.562 kb on + strandat 4351.563 kb on - strandat 4351.563 kb on - strandat 4351.563 kb on - strandat 4351.563 kb on - strandat 4351.566 kb on + strandat 4351.566 kb on + strandat 4351.567 kb on - strandat 4351.567 kb on - strandat 4351.567 kb on - strandat 4351.757 kb on + strand, within AO356_19385at 4351.806 kb on - strand, within AO356_19385at 4351.867 kb on + strand, within AO356_19385at 4351.867 kb on + strand, within AO356_19385at 4351.868 kb on - strand, within AO356_19385at 4351.868 kb on - strand, within AO356_19385at 4351.973 kb on - strand, within AO356_19385at 4351.973 kb on - strand, within AO356_19385at 4351.994 kb on + strand, within AO356_19385at 4351.995 kb on - strand, within AO356_19385at 4352.006 kb on + strand, within AO356_19385at 4352.006 kb on + strand, within AO356_19385at 4352.006 kb on + strand, within AO356_19385at 4352.007 kb on - strand, within AO356_19385at 4352.007 kb on - strand, within AO356_19385at 4352.007 kb on - strand, within AO356_19385at 4352.096 kb on + strand, within AO356_19385at 4352.097 kb on - strand, within AO356_19385at 4352.204 kb on + strand, within AO356_19385at 4352.204 kb on + strand, within AO356_19385at 4352.205 kb on - strand, within AO356_19385at 4352.205 kb on - strand, within AO356_19385at 4352.205 kb on - strand, within AO356_19385at 4352.347 kb on - strand, within AO356_19390at 4352.347 kb on - strand, within AO356_19390at 4352.516 kb on + strandat 4352.527 kb on + strandat 4352.527 kb on + strandat 4352.662 kb on + strandat 4352.662 kb on + strandat 4352.728 kb on + strandat 4352.728 kb on + strandat 4352.728 kb on + strandat 4352.728 kb on + strandat 4352.728 kb on + strandat 4352.729 kb on - strandat 4352.729 kb on - strandat 4352.913 kb on + strand, within AO356_19395at 4352.914 kb on - strand, within AO356_19395at 4352.914 kb on - strand, within AO356_19395at 4352.914 kb on - strand, within AO356_19395at 4352.914 kb on - strand, within AO356_19395at 4352.914 kb on - strand, within AO356_19395at 4352.971 kb on + strand, within AO356_19395at 4353.049 kb on + strand, within AO356_19395at 4353.049 kb on + strand, within AO356_19395at 4353.050 kb on - strand, within AO356_19395at 4353.050 kb on - strand, within AO356_19395at 4353.050 kb on - strand, within AO356_19395at 4353.050 kb on - strand, within AO356_19395at 4353.050 kb on - strand, within AO356_19395at 4353.222 kb on + strand, within AO356_19395at 4353.223 kb on - strand, within AO356_19395at 4353.271 kb on + strand, within AO356_19395at 4353.272 kb on - strand, within AO356_19395at 4353.352 kb on + strand, within AO356_19395at 4353.352 kb on + strand, within AO356_19395at 4353.352 kb on + strand, within AO356_19395at 4353.353 kb on - strand, within AO356_19395at 4353.353 kb on - strand, within AO356_19395

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,351,349 + +0.5
4,351,379 - +0.2
4,351,385 - +0.1
4,351,396 - +0.2
4,351,406 + +0.9
4,351,407 - -0.0
4,351,490 - +1.2
4,351,490 - -0.5
4,351,490 - -0.9
4,351,554 - -0.9
4,351,562 + -2.2
4,351,562 + +0.4
4,351,562 + -0.2
4,351,562 + +0.1
4,351,563 - +1.4
4,351,563 - +0.2
4,351,563 - -1.3
4,351,563 - +0.6
4,351,566 + +0.6
4,351,566 + +0.3
4,351,567 - +1.7
4,351,567 - +1.0
4,351,567 - -0.5
4,351,757 + AO356_19385 0.25 -1.3
4,351,806 - AO356_19385 0.32 -0.1
4,351,867 + AO356_19385 0.40 -0.3
4,351,867 + AO356_19385 0.40 +0.7
4,351,868 - AO356_19385 0.40 -0.5
4,351,868 - AO356_19385 0.40 -1.0
4,351,973 - AO356_19385 0.55 +0.9
4,351,973 - AO356_19385 0.55 -1.2
4,351,994 + AO356_19385 0.58 +0.4
4,351,995 - AO356_19385 0.58 +0.2
4,352,006 + AO356_19385 0.59 +1.4
4,352,006 + AO356_19385 0.59 +0.2
4,352,006 + AO356_19385 0.59 +0.4
4,352,007 - AO356_19385 0.59 +0.1
4,352,007 - AO356_19385 0.59 +0.9
4,352,007 - AO356_19385 0.59 +0.1
4,352,096 + AO356_19385 0.72 +0.2
4,352,097 - AO356_19385 0.72 +1.0
4,352,204 + AO356_19385 0.86 -0.4
4,352,204 + AO356_19385 0.86 +0.1
4,352,205 - AO356_19385 0.87 -0.9
4,352,205 - AO356_19385 0.87 +1.2
4,352,205 - AO356_19385 0.87 -0.4
4,352,347 - AO356_19390 0.20 -1.0
4,352,347 - AO356_19390 0.20 -0.4
4,352,516 + -0.8
4,352,527 + +1.1
4,352,527 + -0.8
4,352,662 + +0.6
4,352,662 + +1.0
4,352,728 + -1.4
4,352,728 + -1.1
4,352,728 + -2.6
4,352,728 + +0.2
4,352,728 + +0.0
4,352,729 - +1.1
4,352,729 - -1.9
4,352,913 + AO356_19395 0.16 -1.3
4,352,914 - AO356_19395 0.16 -0.7
4,352,914 - AO356_19395 0.16 +1.0
4,352,914 - AO356_19395 0.16 +0.0
4,352,914 - AO356_19395 0.16 -0.3
4,352,914 - AO356_19395 0.16 -0.6
4,352,971 + AO356_19395 0.21 -0.1
4,353,049 + AO356_19395 0.27 +0.4
4,353,049 + AO356_19395 0.27 +0.7
4,353,050 - AO356_19395 0.27 -1.1
4,353,050 - AO356_19395 0.27 +0.2
4,353,050 - AO356_19395 0.27 -2.5
4,353,050 - AO356_19395 0.27 +0.3
4,353,050 - AO356_19395 0.27 -0.4
4,353,222 + AO356_19395 0.40 -3.5
4,353,223 - AO356_19395 0.40 -1.0
4,353,271 + AO356_19395 0.44 +1.0
4,353,272 - AO356_19395 0.44 -0.7
4,353,352 + AO356_19395 0.50 -1.9
4,353,352 + AO356_19395 0.50 -0.6
4,353,352 + AO356_19395 0.50 -1.5
4,353,353 - AO356_19395 0.50 -0.2
4,353,353 - AO356_19395 0.50 -2.3

Or see this region's nucleotide sequence