Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19345 and AO356_19350 overlap by 1 nucleotides AO356_19350 and AO356_19355 are separated by 124 nucleotides AO356_19355 and AO356_19360 are separated by 34 nucleotides
AO356_19345: AO356_19345 - hypothetical protein, at 4,344,284 to 4,344,919
_19345
AO356_19350: AO356_19350 - hypothetical protein, at 4,344,919 to 4,345,707
_19350
AO356_19355: AO356_19355 - HAD family hydrolase, at 4,345,832 to 4,346,485
_19355
AO356_19360: AO356_19360 - spermidine/putrescine ABC transporter ATP-binding protein, at 4,346,520 to 4,347,509
_19360
Position (kb)
4345
4346
4347 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4344.852 kb on + strand, within AO356_19345 at 4344.852 kb on + strand, within AO356_19345 at 4344.852 kb on + strand, within AO356_19345 at 4344.852 kb on + strand, within AO356_19345 at 4344.853 kb on - strand, within AO356_19345 at 4344.853 kb on - strand, within AO356_19345 at 4344.872 kb on - strand at 4344.872 kb on - strand at 4344.888 kb on + strand at 4344.888 kb on + strand at 4344.888 kb on + strand at 4344.888 kb on + strand at 4344.889 kb on - strand at 4344.889 kb on - strand at 4344.909 kb on + strand at 4344.909 kb on + strand at 4344.909 kb on + strand at 4344.910 kb on - strand at 4344.910 kb on - strand at 4344.910 kb on - strand at 4345.189 kb on + strand, within AO356_19350 at 4345.190 kb on - strand, within AO356_19350 at 4345.261 kb on + strand, within AO356_19350 at 4345.262 kb on - strand, within AO356_19350 at 4345.262 kb on - strand, within AO356_19350 at 4345.262 kb on - strand, within AO356_19350 at 4345.359 kb on + strand, within AO356_19350 at 4345.399 kb on + strand, within AO356_19350 at 4345.400 kb on - strand, within AO356_19350 at 4345.468 kb on + strand, within AO356_19350 at 4345.469 kb on - strand, within AO356_19350 at 4345.522 kb on + strand, within AO356_19350 at 4345.522 kb on + strand, within AO356_19350 at 4345.523 kb on - strand, within AO356_19350 at 4345.705 kb on + strand at 4345.720 kb on + strand at 4345.720 kb on + strand at 4345.720 kb on + strand at 4345.720 kb on + strand at 4345.721 kb on - strand at 4345.772 kb on + strand at 4345.843 kb on + strand at 4345.843 kb on + strand at 4345.843 kb on + strand at 4345.956 kb on + strand, within AO356_19355 at 4345.956 kb on + strand, within AO356_19355 at 4346.031 kb on + strand, within AO356_19355 at 4346.032 kb on - strand, within AO356_19355 at 4346.062 kb on - strand, within AO356_19355 at 4346.316 kb on + strand, within AO356_19355 at 4346.316 kb on + strand, within AO356_19355 at 4346.316 kb on + strand, within AO356_19355 at 4346.317 kb on - strand, within AO356_19355 at 4346.317 kb on - strand, within AO356_19355 at 4346.317 kb on - strand, within AO356_19355 at 4346.317 kb on - strand, within AO356_19355 at 4346.346 kb on + strand, within AO356_19355 at 4346.346 kb on + strand, within AO356_19355 at 4346.800 kb on + strand, within AO356_19360 at 4346.800 kb on + strand, within AO356_19360 at 4346.800 kb on + strand, within AO356_19360 at 4346.800 kb on + strand, within AO356_19360 at 4346.800 kb on + strand, within AO356_19360 at 4346.801 kb on - strand, within AO356_19360 at 4346.845 kb on + strand, within AO356_19360 at 4346.845 kb on + strand, within AO356_19360 at 4346.845 kb on + strand, within AO356_19360 at 4346.846 kb on - strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.871 kb on + strand, within AO356_19360 at 4346.872 kb on - strand, within AO356_19360 at 4347.259 kb on + strand, within AO356_19360 at 4347.259 kb on + strand, within AO356_19360 at 4347.259 kb on + strand, within AO356_19360 at 4347.259 kb on + strand, within AO356_19360 at 4347.260 kb on - strand, within AO356_19360 at 4347.472 kb on + strand at 4347.473 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,344,852 + AO356_19345 0.89 -1.5 4,344,852 + AO356_19345 0.89 +0.2 4,344,852 + AO356_19345 0.89 +0.1 4,344,852 + AO356_19345 0.89 +0.2 4,344,853 - AO356_19345 0.89 -0.5 4,344,853 - AO356_19345 0.89 +0.6 4,344,872 - +1.0 4,344,872 - -0.8 4,344,888 + +0.6 4,344,888 + +0.2 4,344,888 + +1.1 4,344,888 + +1.9 4,344,889 - -0.8 4,344,889 - +0.7 4,344,909 + -0.4 4,344,909 + -0.8 4,344,909 + +0.6 4,344,910 - +0.5 4,344,910 - -1.0 4,344,910 - -1.2 4,345,189 + AO356_19350 0.34 -1.1 4,345,190 - AO356_19350 0.34 -0.0 4,345,261 + AO356_19350 0.43 +0.5 4,345,262 - AO356_19350 0.43 +0.0 4,345,262 - AO356_19350 0.43 -0.8 4,345,262 - AO356_19350 0.43 -0.7 4,345,359 + AO356_19350 0.56 -0.3 4,345,399 + AO356_19350 0.61 +0.2 4,345,400 - AO356_19350 0.61 -3.2 4,345,468 + AO356_19350 0.70 +0.1 4,345,469 - AO356_19350 0.70 -1.1 4,345,522 + AO356_19350 0.76 +0.1 4,345,522 + AO356_19350 0.76 -2.1 4,345,523 - AO356_19350 0.77 +0.8 4,345,705 + +0.1 4,345,720 + -0.6 4,345,720 + -0.4 4,345,720 + -1.3 4,345,720 + +1.7 4,345,721 - +0.1 4,345,772 + -1.0 4,345,843 + -0.0 4,345,843 + -0.5 4,345,843 + +0.4 4,345,956 + AO356_19355 0.19 +0.7 4,345,956 + AO356_19355 0.19 -1.5 4,346,031 + AO356_19355 0.30 +1.8 4,346,032 - AO356_19355 0.31 +0.4 4,346,062 - AO356_19355 0.35 -0.4 4,346,316 + AO356_19355 0.74 +0.8 4,346,316 + AO356_19355 0.74 -0.4 4,346,316 + AO356_19355 0.74 -1.6 4,346,317 - AO356_19355 0.74 -0.6 4,346,317 - AO356_19355 0.74 +0.5 4,346,317 - AO356_19355 0.74 +1.2 4,346,317 - AO356_19355 0.74 +0.2 4,346,346 + AO356_19355 0.79 +0.5 4,346,346 + AO356_19355 0.79 -2.1 4,346,800 + AO356_19360 0.28 -1.3 4,346,800 + AO356_19360 0.28 +1.0 4,346,800 + AO356_19360 0.28 -0.2 4,346,800 + AO356_19360 0.28 -1.5 4,346,800 + AO356_19360 0.28 +0.2 4,346,801 - AO356_19360 0.28 -0.2 4,346,845 + AO356_19360 0.33 -2.1 4,346,845 + AO356_19360 0.33 +0.7 4,346,845 + AO356_19360 0.33 -1.4 4,346,846 - AO356_19360 0.33 +0.4 4,346,871 + AO356_19360 0.35 -0.2 4,346,871 + AO356_19360 0.35 -0.4 4,346,871 + AO356_19360 0.35 -0.3 4,346,871 + AO356_19360 0.35 +0.4 4,346,871 + AO356_19360 0.35 -0.4 4,346,871 + AO356_19360 0.35 +0.6 4,346,872 - AO356_19360 0.36 -1.1 4,347,259 + AO356_19360 0.75 +1.0 4,347,259 + AO356_19360 0.75 +0.4 4,347,259 + AO356_19360 0.75 -1.1 4,347,259 + AO356_19360 0.75 -0.8 4,347,260 - AO356_19360 0.75 +2.0 4,347,472 + +0.2 4,347,473 - -1.5
Or see this region's nucleotide sequence