Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19265 and AO356_19270 are separated by 160 nucleotides AO356_19270 and AO356_19275 are separated by 19 nucleotides AO356_19275 and AO356_19280 are separated by 173 nucleotides AO356_19280 and AO356_19285 are separated by 17 nucleotides AO356_19285 and AO356_19290 are separated by 92 nucleotides
AO356_19265: AO356_19265 - recombination-associated protein RdgC, at 4,325,639 to 4,326,559
_19265
AO356_19270: AO356_19270 - tRNA-Val, at 4,326,720 to 4,326,795
_19270
AO356_19275: AO356_19275 - tRNA-Asp, at 4,326,815 to 4,326,891
_19275
AO356_19280: AO356_19280 - tRNA-Val, at 4,327,065 to 4,327,140
_19280
AO356_19285: AO356_19285 - tRNA-Asp, at 4,327,158 to 4,327,234
_19285
AO356_19290: AO356_19290 - catalase, at 4,327,327 to 4,328,463
_19290
Position (kb)
4327
4328 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4326.259 kb on + strand, within AO356_19265 at 4326.260 kb on - strand, within AO356_19265 at 4326.328 kb on + strand, within AO356_19265 at 4326.435 kb on + strand, within AO356_19265 at 4326.435 kb on + strand, within AO356_19265 at 4326.436 kb on - strand, within AO356_19265 at 4326.534 kb on + strand at 4326.535 kb on - strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.538 kb on + strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.539 kb on - strand at 4326.579 kb on + strand at 4326.580 kb on - strand at 4326.580 kb on - strand at 4326.580 kb on - strand at 4326.594 kb on + strand at 4326.613 kb on + strand at 4326.660 kb on + strand at 4326.693 kb on + strand at 4326.892 kb on + strand at 4327.010 kb on + strand at 4327.010 kb on + strand at 4327.073 kb on - strand, within AO356_19280 at 4327.154 kb on - strand at 4327.166 kb on - strand, within AO356_19285 at 4327.329 kb on - strand at 4327.373 kb on + strand at 4327.373 kb on + strand at 4327.374 kb on - strand at 4327.374 kb on - strand at 4327.374 kb on - strand at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.574 kb on + strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.575 kb on - strand, within AO356_19290 at 4327.636 kb on + strand, within AO356_19290 at 4327.698 kb on + strand, within AO356_19290 at 4327.698 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.700 kb on + strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.701 kb on - strand, within AO356_19290 at 4327.763 kb on + strand, within AO356_19290 at 4327.781 kb on + strand, within AO356_19290 at 4327.781 kb on + strand, within AO356_19290 at 4327.782 kb on - strand, within AO356_19290 at 4327.928 kb on + strand, within AO356_19290
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,326,259 + AO356_19265 0.67 +0.3 4,326,260 - AO356_19265 0.67 -0.2 4,326,328 + AO356_19265 0.75 -1.8 4,326,435 + AO356_19265 0.86 -3.4 4,326,435 + AO356_19265 0.86 -0.6 4,326,436 - AO356_19265 0.87 -1.5 4,326,534 + +0.1 4,326,535 - -1.7 4,326,538 + -0.5 4,326,538 + -0.8 4,326,538 + +1.3 4,326,538 + -1.7 4,326,538 + -2.7 4,326,538 + -0.4 4,326,538 + -1.5 4,326,538 + +0.5 4,326,538 + -1.4 4,326,538 + +0.4 4,326,538 + -0.1 4,326,539 - -1.0 4,326,539 - +0.4 4,326,539 - +0.5 4,326,539 - -0.2 4,326,539 - -1.6 4,326,539 - -0.5 4,326,539 - +0.1 4,326,579 + -0.4 4,326,580 - -0.2 4,326,580 - +0.5 4,326,580 - -1.4 4,326,594 + -2.7 4,326,613 + -0.8 4,326,660 + -0.3 4,326,693 + +2.0 4,326,892 + -2.1 4,327,010 + -0.1 4,327,010 + +0.1 4,327,073 - AO356_19280 0.11 +1.4 4,327,154 - +0.8 4,327,166 - AO356_19285 0.10 -0.6 4,327,329 - -0.4 4,327,373 + -0.8 4,327,373 + -0.8 4,327,374 - +1.5 4,327,374 - +0.9 4,327,374 - +0.1 4,327,574 + AO356_19290 0.22 -0.6 4,327,574 + AO356_19290 0.22 +1.2 4,327,574 + AO356_19290 0.22 +0.4 4,327,574 + AO356_19290 0.22 +0.1 4,327,574 + AO356_19290 0.22 -0.3 4,327,574 + AO356_19290 0.22 -1.4 4,327,574 + AO356_19290 0.22 +1.7 4,327,575 - AO356_19290 0.22 -0.6 4,327,575 - AO356_19290 0.22 +0.7 4,327,575 - AO356_19290 0.22 -0.2 4,327,575 - AO356_19290 0.22 +0.2 4,327,575 - AO356_19290 0.22 +0.9 4,327,575 - AO356_19290 0.22 +1.9 4,327,575 - AO356_19290 0.22 +0.7 4,327,575 - AO356_19290 0.22 -0.3 4,327,636 + AO356_19290 0.27 +1.1 4,327,698 + AO356_19290 0.33 -0.1 4,327,698 + AO356_19290 0.33 -0.2 4,327,700 + AO356_19290 0.33 -0.9 4,327,700 + AO356_19290 0.33 +0.8 4,327,700 + AO356_19290 0.33 -0.3 4,327,700 + AO356_19290 0.33 +1.1 4,327,700 + AO356_19290 0.33 -0.2 4,327,700 + AO356_19290 0.33 +1.6 4,327,700 + AO356_19290 0.33 +1.2 4,327,700 + AO356_19290 0.33 +1.2 4,327,701 - AO356_19290 0.33 +1.2 4,327,701 - AO356_19290 0.33 -1.3 4,327,701 - AO356_19290 0.33 +0.5 4,327,701 - AO356_19290 0.33 +0.2 4,327,701 - AO356_19290 0.33 -0.3 4,327,701 - AO356_19290 0.33 +0.7 4,327,701 - AO356_19290 0.33 +1.5 4,327,701 - AO356_19290 0.33 +0.2 4,327,701 - AO356_19290 0.33 +0.2 4,327,701 - AO356_19290 0.33 +0.5 4,327,701 - AO356_19290 0.33 -0.8 4,327,763 + AO356_19290 0.38 +0.0 4,327,781 + AO356_19290 0.40 +0.6 4,327,781 + AO356_19290 0.40 +0.5 4,327,782 - AO356_19290 0.40 -0.2 4,327,928 + AO356_19290 0.53 +1.9
Or see this region's nucleotide sequence