Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19255

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19250 and AO356_19255 are separated by 178 nucleotidesAO356_19255 and AO356_19260 are separated by 118 nucleotides AO356_19250: AO356_19250 - glycerol acyltransferase, at 4,322,043 to 4,323,917 _19250 AO356_19255: AO356_19255 - molecular chaperone, at 4,324,096 to 4,324,410 _19255 AO356_19260: AO356_19260 - sodium transporter, at 4,324,529 to 4,325,494 _19260 Position (kb) 4324 4325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4323.096 kb on + strand, within AO356_19250at 4323.096 kb on + strand, within AO356_19250at 4323.096 kb on + strand, within AO356_19250at 4323.096 kb on + strand, within AO356_19250at 4323.096 kb on + strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.097 kb on - strand, within AO356_19250at 4323.111 kb on + strand, within AO356_19250at 4323.111 kb on + strand, within AO356_19250at 4323.111 kb on + strand, within AO356_19250at 4323.112 kb on - strand, within AO356_19250at 4323.112 kb on - strand, within AO356_19250at 4323.297 kb on + strand, within AO356_19250at 4323.298 kb on - strand, within AO356_19250at 4323.363 kb on + strand, within AO356_19250at 4323.363 kb on + strand, within AO356_19250at 4323.364 kb on - strand, within AO356_19250at 4323.364 kb on - strand, within AO356_19250at 4323.495 kb on + strand, within AO356_19250at 4323.495 kb on + strand, within AO356_19250at 4323.495 kb on + strand, within AO356_19250at 4323.495 kb on + strand, within AO356_19250at 4323.496 kb on - strand, within AO356_19250at 4323.496 kb on - strand, within AO356_19250at 4323.496 kb on - strand, within AO356_19250at 4323.496 kb on - strand, within AO356_19250at 4323.496 kb on - strand, within AO356_19250at 4323.498 kb on + strand, within AO356_19250at 4323.498 kb on + strand, within AO356_19250at 4323.498 kb on + strand, within AO356_19250at 4323.498 kb on + strand, within AO356_19250at 4323.498 kb on + strand, within AO356_19250at 4323.499 kb on - strand, within AO356_19250at 4323.499 kb on - strand, within AO356_19250at 4323.507 kb on + strand, within AO356_19250at 4323.507 kb on + strand, within AO356_19250at 4323.507 kb on + strand, within AO356_19250at 4323.507 kb on + strand, within AO356_19250at 4323.507 kb on + strand, within AO356_19250at 4323.508 kb on - strand, within AO356_19250at 4323.508 kb on - strand, within AO356_19250at 4323.508 kb on - strand, within AO356_19250at 4323.508 kb on - strand, within AO356_19250at 4323.588 kb on + strand, within AO356_19250at 4323.618 kb on + strand, within AO356_19250at 4323.618 kb on + strand, within AO356_19250at 4323.953 kb on - strandat 4323.953 kb on - strandat 4324.046 kb on + strandat 4324.047 kb on - strandat 4324.243 kb on - strand, within AO356_19255at 4324.346 kb on + strand, within AO356_19255at 4324.346 kb on + strand, within AO356_19255at 4324.347 kb on - strand, within AO356_19255at 4324.446 kb on + strandat 4324.456 kb on + strandat 4324.456 kb on + strandat 4324.456 kb on + strandat 4324.456 kb on + strandat 4324.456 kb on + strandat 4324.457 kb on - strandat 4324.590 kb on + strandat 4324.590 kb on + strandat 4324.591 kb on - strandat 4324.774 kb on - strand, within AO356_19260at 4324.774 kb on - strand, within AO356_19260at 4324.892 kb on + strand, within AO356_19260at 4324.892 kb on + strand, within AO356_19260at 4324.893 kb on - strand, within AO356_19260at 4325.190 kb on - strand, within AO356_19260at 4325.190 kb on - strand, within AO356_19260

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,323,096 + AO356_19250 0.56 +0.1
4,323,096 + AO356_19250 0.56 -0.5
4,323,096 + AO356_19250 0.56 -0.0
4,323,096 + AO356_19250 0.56 -1.4
4,323,096 + AO356_19250 0.56 +0.4
4,323,097 - AO356_19250 0.56 -1.3
4,323,097 - AO356_19250 0.56 +0.7
4,323,097 - AO356_19250 0.56 -0.4
4,323,097 - AO356_19250 0.56 -1.1
4,323,097 - AO356_19250 0.56 +0.8
4,323,097 - AO356_19250 0.56 -1.0
4,323,097 - AO356_19250 0.56 +3.0
4,323,111 + AO356_19250 0.57 +0.2
4,323,111 + AO356_19250 0.57 +0.8
4,323,111 + AO356_19250 0.57 +0.6
4,323,112 - AO356_19250 0.57 +1.3
4,323,112 - AO356_19250 0.57 +0.3
4,323,297 + AO356_19250 0.67 -0.1
4,323,298 - AO356_19250 0.67 -1.5
4,323,363 + AO356_19250 0.70 +0.3
4,323,363 + AO356_19250 0.70 -1.4
4,323,364 - AO356_19250 0.70 -1.4
4,323,364 - AO356_19250 0.70 +1.4
4,323,495 + AO356_19250 0.77 +0.6
4,323,495 + AO356_19250 0.77 +0.6
4,323,495 + AO356_19250 0.77 +0.4
4,323,495 + AO356_19250 0.77 +1.3
4,323,496 - AO356_19250 0.77 -0.7
4,323,496 - AO356_19250 0.77 +0.4
4,323,496 - AO356_19250 0.77 +1.9
4,323,496 - AO356_19250 0.77 -0.1
4,323,496 - AO356_19250 0.77 +0.2
4,323,498 + AO356_19250 0.78 -0.1
4,323,498 + AO356_19250 0.78 +0.2
4,323,498 + AO356_19250 0.78 +0.4
4,323,498 + AO356_19250 0.78 -1.9
4,323,498 + AO356_19250 0.78 +2.4
4,323,499 - AO356_19250 0.78 -0.6
4,323,499 - AO356_19250 0.78 -0.9
4,323,507 + AO356_19250 0.78 -0.1
4,323,507 + AO356_19250 0.78 -0.5
4,323,507 + AO356_19250 0.78 -0.0
4,323,507 + AO356_19250 0.78 +0.1
4,323,507 + AO356_19250 0.78 +0.3
4,323,508 - AO356_19250 0.78 -0.9
4,323,508 - AO356_19250 0.78 -0.1
4,323,508 - AO356_19250 0.78 +0.6
4,323,508 - AO356_19250 0.78 +1.0
4,323,588 + AO356_19250 0.82 +0.7
4,323,618 + AO356_19250 0.84 +1.5
4,323,618 + AO356_19250 0.84 +0.9
4,323,953 - +0.5
4,323,953 - +0.4
4,324,046 + +0.9
4,324,047 - +0.5
4,324,243 - AO356_19255 0.47 +1.0
4,324,346 + AO356_19255 0.79 +1.5
4,324,346 + AO356_19255 0.79 +1.9
4,324,347 - AO356_19255 0.80 -1.3
4,324,446 + -0.1
4,324,456 + -1.1
4,324,456 + +0.8
4,324,456 + -0.1
4,324,456 + -1.3
4,324,456 + -3.0
4,324,457 - +0.5
4,324,590 + +1.4
4,324,590 + +0.2
4,324,591 - -0.9
4,324,774 - AO356_19260 0.25 +1.5
4,324,774 - AO356_19260 0.25 +0.4
4,324,892 + AO356_19260 0.38 +0.1
4,324,892 + AO356_19260 0.38 +0.2
4,324,893 - AO356_19260 0.38 +1.2
4,325,190 - AO356_19260 0.68 +1.4
4,325,190 - AO356_19260 0.68 +0.6

Or see this region's nucleotide sequence