Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19165

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19160 and AO356_19165 are separated by 151 nucleotidesAO356_19165 and AO356_19170 overlap by 4 nucleotides AO356_19160: AO356_19160 - cobyric acid synthase, at 4,302,332 to 4,303,783 _19160 AO356_19165: AO356_19165 - adenosylcobinamide kinase, at 4,303,935 to 4,304,456 _19165 AO356_19170: AO356_19170 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,304,453 to 4,305,508 _19170 Position (kb) 4303 4304 4305Strain fitness (log2 ratio) -2 -1 0 1 2at 4303.004 kb on + strand, within AO356_19160at 4303.005 kb on - strand, within AO356_19160at 4303.245 kb on - strand, within AO356_19160at 4303.293 kb on - strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.604 kb on + strand, within AO356_19160at 4303.605 kb on - strand, within AO356_19160at 4303.688 kb on + strandat 4303.781 kb on + strandat 4303.782 kb on - strandat 4303.782 kb on - strandat 4303.851 kb on + strandat 4303.851 kb on + strandat 4303.851 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.855 kb on + strandat 4303.856 kb on - strandat 4303.856 kb on - strandat 4303.856 kb on - strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.919 kb on + strandat 4303.971 kb on - strandat 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.022 kb on + strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.023 kb on - strand, within AO356_19165at 4304.445 kb on - strandat 4304.445 kb on - strandat 4305.200 kb on + strand, within AO356_19170at 4305.200 kb on + strand, within AO356_19170at 4305.200 kb on + strand, within AO356_19170at 4305.201 kb on - strand, within AO356_19170at 4305.201 kb on - strand, within AO356_19170at 4305.201 kb on - strand, within AO356_19170at 4305.201 kb on - strand, within AO356_19170at 4305.201 kb on - strand, within AO356_19170at 4305.253 kb on + strand, within AO356_19170

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,303,004 + AO356_19160 0.46 +0.5
4,303,005 - AO356_19160 0.46 +0.6
4,303,245 - AO356_19160 0.63 +1.3
4,303,293 - AO356_19160 0.66 +1.2
4,303,604 + AO356_19160 0.88 +0.2
4,303,604 + AO356_19160 0.88 +0.6
4,303,604 + AO356_19160 0.88 +0.0
4,303,604 + AO356_19160 0.88 -1.1
4,303,604 + AO356_19160 0.88 +2.1
4,303,605 - AO356_19160 0.88 +0.6
4,303,688 + +1.4
4,303,781 + +0.8
4,303,782 - +0.7
4,303,782 - -1.2
4,303,851 + -0.6
4,303,851 + +1.1
4,303,851 + +0.0
4,303,855 + +0.6
4,303,855 + +0.9
4,303,855 + -0.9
4,303,855 + +0.1
4,303,855 + +0.8
4,303,856 - -0.1
4,303,856 - -0.1
4,303,856 - +0.7
4,303,919 + -0.4
4,303,919 + -1.3
4,303,919 + +0.9
4,303,919 + +1.0
4,303,971 - -2.0
4,304,022 + AO356_19165 0.17 -1.8
4,304,022 + AO356_19165 0.17 +0.8
4,304,022 + AO356_19165 0.17 +0.5
4,304,022 + AO356_19165 0.17 +0.7
4,304,022 + AO356_19165 0.17 +1.4
4,304,023 - AO356_19165 0.17 +1.5
4,304,023 - AO356_19165 0.17 +1.8
4,304,023 - AO356_19165 0.17 -1.2
4,304,445 - +2.6
4,304,445 - +1.1
4,305,200 + AO356_19170 0.71 +1.3
4,305,200 + AO356_19170 0.71 +1.6
4,305,200 + AO356_19170 0.71 +1.0
4,305,201 - AO356_19170 0.71 -0.3
4,305,201 - AO356_19170 0.71 +0.4
4,305,201 - AO356_19170 0.71 -0.3
4,305,201 - AO356_19170 0.71 +2.2
4,305,201 - AO356_19170 0.71 -0.2
4,305,253 + AO356_19170 0.76 +0.6

Or see this region's nucleotide sequence