Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19110

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19105 and AO356_19110 are separated by 169 nucleotidesAO356_19110 and AO356_19115 are separated by 212 nucleotides AO356_19105: AO356_19105 - hypothetical protein, at 4,291,722 to 4,292,795 _19105 AO356_19110: AO356_19110 - DnaA regulatory inactivator Hda, at 4,292,965 to 4,293,669 _19110 AO356_19115: AO356_19115 - peptidase P60, at 4,293,882 to 4,294,508 _19115 Position (kb) 4292 4293 4294Strain fitness (log2 ratio) -2 -1 0 1 2at 4291.984 kb on - strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.221 kb on - strand, within AO356_19105at 4292.221 kb on - strand, within AO356_19105at 4292.356 kb on + strand, within AO356_19105at 4292.379 kb on + strand, within AO356_19105at 4292.380 kb on - strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.735 kb on + strandat 4292.735 kb on + strandat 4292.735 kb on + strandat 4292.736 kb on - strandat 4292.736 kb on - strandat 4292.736 kb on - strandat 4292.748 kb on + strandat 4292.748 kb on + strandat 4292.748 kb on + strandat 4292.749 kb on - strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.794 kb on - strandat 4292.903 kb on + strandat 4292.903 kb on + strandat 4292.905 kb on + strandat 4292.921 kb on + strandat 4292.921 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.668 kb on - strandat 4293.668 kb on - strandat 4293.763 kb on + strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.771 kb on + strandat 4293.771 kb on + strandat 4293.772 kb on - strandat 4293.772 kb on - strandat 4293.777 kb on + strandat 4293.777 kb on + strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.784 kb on - strandat 4293.834 kb on - strandat 4293.834 kb on - strandat 4293.842 kb on + strandat 4293.842 kb on + strandat 4293.843 kb on - strandat 4293.857 kb on + strandat 4293.860 kb on + strandat 4293.886 kb on + strandat 4293.887 kb on - strandat 4293.887 kb on - strandat 4293.887 kb on - strandat 4294.106 kb on + strand, within AO356_19115at 4294.106 kb on + strand, within AO356_19115at 4294.106 kb on + strand, within AO356_19115at 4294.107 kb on - strand, within AO356_19115at 4294.158 kb on - strand, within AO356_19115at 4294.197 kb on + strand, within AO356_19115at 4294.197 kb on + strand, within AO356_19115at 4294.352 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.357 kb on - strand, within AO356_19115at 4294.357 kb on - strand, within AO356_19115at 4294.434 kb on + strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.506 kb on + strandat 4294.532 kb on + strandat 4294.558 kb on + strandat 4294.559 kb on - strandat 4294.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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4,291,984 - AO356_19105 0.24 +0.3
4,292,220 + AO356_19105 0.46 -0.9
4,292,220 + AO356_19105 0.46 -2.3
4,292,220 + AO356_19105 0.46 -1.3
4,292,220 + AO356_19105 0.46 +1.4
4,292,221 - AO356_19105 0.46 -0.4
4,292,221 - AO356_19105 0.46 -1.5
4,292,356 + AO356_19105 0.59 -0.5
4,292,379 + AO356_19105 0.61 +0.9
4,292,380 - AO356_19105 0.61 +0.3
4,292,460 + AO356_19105 0.69 +0.3
4,292,460 + AO356_19105 0.69 +0.3
4,292,460 + AO356_19105 0.69 +1.3
4,292,461 - AO356_19105 0.69 +0.8
4,292,461 - AO356_19105 0.69 -1.4
4,292,461 - AO356_19105 0.69 +0.1
4,292,461 - AO356_19105 0.69 -1.1
4,292,461 - AO356_19105 0.69 +0.8
4,292,461 - AO356_19105 0.69 -0.4
4,292,461 - AO356_19105 0.69 -0.9
4,292,461 - AO356_19105 0.69 -1.1
4,292,461 - AO356_19105 0.69 +2.2
4,292,461 - AO356_19105 0.69 -1.0
4,292,735 + +0.2
4,292,735 + +1.7
4,292,735 + -1.2
4,292,736 - -1.1
4,292,736 - +0.4
4,292,736 - -0.3
4,292,748 + +0.7
4,292,748 + +1.3
4,292,748 + +1.3
4,292,749 - -2.2
4,292,766 + -1.0
4,292,766 + +1.4
4,292,766 + -1.2
4,292,766 + +0.3
4,292,766 + -0.6
4,292,766 + +0.9
4,292,766 + +1.4
4,292,766 + +0.7
4,292,767 - +0.9
4,292,767 - -0.1
4,292,767 - -0.4
4,292,767 - -0.6
4,292,767 - -0.5
4,292,794 - +0.4
4,292,903 + -0.2
4,292,903 + +1.0
4,292,905 + -0.3
4,292,921 + +0.4
4,292,921 + -0.3
4,293,667 + -1.3
4,293,667 + -2.0
4,293,667 + -1.4
4,293,668 - +0.1
4,293,668 - -1.2
4,293,763 + +0.5
4,293,764 - +0.0
4,293,764 - -0.8
4,293,764 - +1.4
4,293,771 + -0.3
4,293,771 + -1.6
4,293,772 - +2.2
4,293,772 - +2.6
4,293,777 + +2.3
4,293,777 + -0.1
4,293,778 - +1.4
4,293,778 - -0.2
4,293,778 - -1.1
4,293,778 - +0.8
4,293,784 - +0.4
4,293,834 - -1.2
4,293,834 - +1.6
4,293,842 + +1.7
4,293,842 + +0.7
4,293,843 - +0.2
4,293,857 + +0.4
4,293,860 + +0.5
4,293,886 + +2.6
4,293,887 - +0.0
4,293,887 - +0.8
4,293,887 - -1.1
4,294,106 + AO356_19115 0.36 +0.4
4,294,106 + AO356_19115 0.36 +0.4
4,294,106 + AO356_19115 0.36 -1.3
4,294,107 - AO356_19115 0.36 +0.4
4,294,158 - AO356_19115 0.44 -0.2
4,294,197 + AO356_19115 0.50 -1.8
4,294,197 + AO356_19115 0.50 +1.6
4,294,352 + AO356_19115 0.75 +1.2
4,294,356 + AO356_19115 0.76 -0.7
4,294,356 + AO356_19115 0.76 +0.3
4,294,356 + AO356_19115 0.76 +0.1
4,294,357 - AO356_19115 0.76 +1.3
4,294,357 - AO356_19115 0.76 +1.4
4,294,434 + AO356_19115 0.88 +0.5
4,294,435 - AO356_19115 0.88 -0.5
4,294,435 - AO356_19115 0.88 +1.9
4,294,435 - AO356_19115 0.88 +0.3
4,294,506 + -0.0
4,294,532 + -0.3
4,294,558 + -0.5
4,294,559 - -0.6
4,294,559 - -0.5

Or see this region's nucleotide sequence