Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18740 and AO356_18745 are separated by 255 nucleotides AO356_18745 and AO356_18750 are separated by 69 nucleotides AO356_18750 and AO356_18755 are separated by 12 nucleotides
AO356_18740: AO356_18740 - succinylglutamate-semialdehyde dehydrogenase, at 4,210,070 to 4,211,536
_18740
AO356_18745: AO356_18745 - succinylarginine dihydrolase, at 4,211,792 to 4,213,138
_18745
AO356_18750: AO356_18750 - topoisomerase II, at 4,213,208 to 4,213,495
_18750
AO356_18755: AO356_18755 - succinylglutamate desuccinylase, at 4,213,508 to 4,214,515
_18755
Position (kb)
4211
4212
4213
4214 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4211.266 kb on + strand, within AO356_18740 at 4211.267 kb on - strand, within AO356_18740 at 4211.267 kb on - strand, within AO356_18740 at 4211.267 kb on - strand, within AO356_18740 at 4211.439 kb on - strand at 4211.439 kb on - strand at 4211.439 kb on - strand at 4211.439 kb on - strand at 4211.441 kb on + strand at 4211.441 kb on + strand at 4211.442 kb on - strand at 4211.453 kb on + strand at 4211.575 kb on - strand at 4211.697 kb on + strand at 4211.697 kb on + strand at 4211.697 kb on + strand at 4211.697 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.749 kb on + strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.750 kb on - strand at 4211.760 kb on + strand at 4211.762 kb on + strand at 4211.763 kb on - strand at 4211.763 kb on - strand at 4211.801 kb on + strand at 4211.802 kb on - strand at 4211.823 kb on + strand at 4211.823 kb on + strand at 4211.824 kb on - strand at 4211.840 kb on - strand at 4211.840 kb on - strand at 4211.844 kb on - strand at 4211.844 kb on - strand at 4212.197 kb on + strand, within AO356_18745 at 4212.197 kb on + strand, within AO356_18745 at 4212.198 kb on - strand, within AO356_18745 at 4212.198 kb on - strand, within AO356_18745 at 4212.205 kb on + strand, within AO356_18745 at 4212.205 kb on + strand, within AO356_18745 at 4212.347 kb on + strand, within AO356_18745 at 4212.422 kb on + strand, within AO356_18745 at 4212.423 kb on - strand, within AO356_18745 at 4212.497 kb on + strand, within AO356_18745 at 4212.497 kb on + strand, within AO356_18745 at 4212.497 kb on + strand, within AO356_18745 at 4212.581 kb on + strand, within AO356_18745 at 4212.581 kb on + strand, within AO356_18745 at 4212.582 kb on - strand, within AO356_18745 at 4212.582 kb on - strand, within AO356_18745 at 4212.582 kb on - strand, within AO356_18745 at 4212.582 kb on - strand, within AO356_18745 at 4212.708 kb on + strand, within AO356_18745 at 4212.709 kb on - strand, within AO356_18745 at 4212.717 kb on - strand, within AO356_18745 at 4212.717 kb on - strand, within AO356_18745 at 4212.717 kb on - strand, within AO356_18745 at 4212.717 kb on - strand, within AO356_18745 at 4212.809 kb on + strand, within AO356_18745 at 4212.810 kb on - strand, within AO356_18745 at 4212.810 kb on - strand, within AO356_18745 at 4212.961 kb on + strand, within AO356_18745 at 4212.980 kb on + strand, within AO356_18745 at 4213.102 kb on + strand at 4213.119 kb on - strand at 4213.157 kb on + strand at 4213.157 kb on + strand at 4213.157 kb on + strand at 4213.158 kb on - strand at 4213.158 kb on - strand at 4213.158 kb on - strand at 4213.201 kb on + strand at 4213.201 kb on + strand at 4213.202 kb on - strand at 4213.202 kb on - strand at 4213.202 kb on - strand at 4213.217 kb on - strand at 4213.373 kb on + strand, within AO356_18750 at 4213.949 kb on + strand, within AO356_18755 at 4214.111 kb on + strand, within AO356_18755 at 4214.111 kb on + strand, within AO356_18755 at 4214.111 kb on + strand, within AO356_18755 at 4214.111 kb on + strand, within AO356_18755 at 4214.112 kb on - strand, within AO356_18755 at 4214.112 kb on - strand, within AO356_18755 at 4214.113 kb on + strand, within AO356_18755 at 4214.113 kb on + strand, within AO356_18755 at 4214.113 kb on + strand, within AO356_18755 at 4214.114 kb on - strand, within AO356_18755 at 4214.117 kb on + strand, within AO356_18755 at 4214.117 kb on + strand, within AO356_18755 at 4214.117 kb on + strand, within AO356_18755 at 4214.117 kb on + strand, within AO356_18755 at 4214.118 kb on - strand, within AO356_18755 at 4214.118 kb on - strand, within AO356_18755
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 4,211,266 + AO356_18740 0.82 -0.4 4,211,267 - AO356_18740 0.82 +1.1 4,211,267 - AO356_18740 0.82 +3.3 4,211,267 - AO356_18740 0.82 +1.1 4,211,439 - +0.5 4,211,439 - +1.3 4,211,439 - +1.7 4,211,439 - +1.2 4,211,441 + -0.2 4,211,441 + +0.1 4,211,442 - +0.4 4,211,453 + -1.5 4,211,575 - +1.4 4,211,697 + -0.0 4,211,697 + +0.1 4,211,697 + +0.3 4,211,697 + -0.8 4,211,749 + +0.4 4,211,749 + +1.0 4,211,749 + +0.0 4,211,750 - +0.0 4,211,750 - +0.9 4,211,750 - +0.7 4,211,760 + +0.9 4,211,762 + +0.9 4,211,763 - +0.5 4,211,763 - +0.7 4,211,801 + +1.4 4,211,802 - +1.3 4,211,823 + -0.0 4,211,823 + +1.9 4,211,824 - -0.3 4,211,840 - -0.5 4,211,840 - +1.6 4,211,844 - +1.6 4,211,844 - +2.0 4,212,197 + AO356_18745 0.30 +1.8 4,212,197 + AO356_18745 0.30 +1.1 4,212,198 - AO356_18745 0.30 -1.3 4,212,198 - AO356_18745 0.30 +1.5 4,212,205 + AO356_18745 0.31 +0.5 4,212,205 + AO356_18745 0.31 +1.8 4,212,347 + AO356_18745 0.41 +1.2 4,212,422 + AO356_18745 0.47 +0.7 4,212,423 - AO356_18745 0.47 +1.3 4,212,497 + AO356_18745 0.52 +0.4 4,212,497 + AO356_18745 0.52 -1.5 4,212,497 + AO356_18745 0.52 -0.3 4,212,581 + AO356_18745 0.59 +1.9 4,212,581 + AO356_18745 0.59 +1.7 4,212,582 - AO356_18745 0.59 +2.3 4,212,582 - AO356_18745 0.59 +1.1 4,212,582 - AO356_18745 0.59 +0.4 4,212,582 - AO356_18745 0.59 +0.2 4,212,708 + AO356_18745 0.68 -0.2 4,212,709 - AO356_18745 0.68 -0.5 4,212,717 - AO356_18745 0.69 +1.0 4,212,717 - AO356_18745 0.69 +1.3 4,212,717 - AO356_18745 0.69 +1.0 4,212,717 - AO356_18745 0.69 +0.6 4,212,809 + AO356_18745 0.76 +1.4 4,212,810 - AO356_18745 0.76 +0.1 4,212,810 - AO356_18745 0.76 +0.1 4,212,961 + AO356_18745 0.87 +2.1 4,212,980 + AO356_18745 0.88 +1.8 4,213,102 + +0.2 4,213,119 - +2.1 4,213,157 + -0.1 4,213,157 + -0.8 4,213,157 + +0.2 4,213,158 - -0.9 4,213,158 - -0.2 4,213,158 - -0.2 4,213,201 + -1.4 4,213,201 + -0.0 4,213,202 - -0.7 4,213,202 - -0.4 4,213,202 - -0.0 4,213,217 - -0.2 4,213,373 + AO356_18750 0.57 +0.7 4,213,949 + AO356_18755 0.44 -0.2 4,214,111 + AO356_18755 0.60 -0.2 4,214,111 + AO356_18755 0.60 -2.6 4,214,111 + AO356_18755 0.60 +0.5 4,214,111 + AO356_18755 0.60 +0.9 4,214,112 - AO356_18755 0.60 -0.4 4,214,112 - AO356_18755 0.60 -0.4 4,214,113 + AO356_18755 0.60 -0.0 4,214,113 + AO356_18755 0.60 +0.8 4,214,113 + AO356_18755 0.60 -1.8 4,214,114 - AO356_18755 0.60 -1.2 4,214,117 + AO356_18755 0.60 +2.0 4,214,117 + AO356_18755 0.60 -1.8 4,214,117 + AO356_18755 0.60 +0.5 4,214,117 + AO356_18755 0.60 -1.6 4,214,118 - AO356_18755 0.61 +0.2 4,214,118 - AO356_18755 0.61 -2.8
Or see this region's nucleotide sequence