Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16955

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16950 and AO356_16955 are separated by 585 nucleotidesAO356_16955 and AO356_16960 are separated by 774 nucleotides AO356_16950: AO356_16950 - dihydropteridine reductase, at 3,819,614 to 3,820,795 _16950 AO356_16955: AO356_16955 - disulfide bond formation protein B, at 3,821,381 to 3,821,890 _16955 AO356_16960: AO356_16960 - ubiquinol oxidase subunit II, at 3,822,665 to 3,823,612 _16960 Position (kb) 3821 3822Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3820.571 kb on + strand, within AO356_16950at 3820.571 kb on + strand, within AO356_16950at 3820.571 kb on + strand, within AO356_16950at 3820.572 kb on - strand, within AO356_16950at 3820.572 kb on - strand, within AO356_16950at 3820.572 kb on - strand, within AO356_16950at 3820.577 kb on + strand, within AO356_16950at 3820.577 kb on + strand, within AO356_16950at 3820.578 kb on - strand, within AO356_16950at 3820.679 kb on + strandat 3820.679 kb on + strandat 3820.679 kb on + strandat 3820.680 kb on - strandat 3820.680 kb on - strandat 3820.680 kb on - strandat 3820.680 kb on - strandat 3820.680 kb on - strandat 3820.680 kb on - strandat 3820.793 kb on + strandat 3820.793 kb on + strandat 3820.793 kb on + strandat 3820.793 kb on + strandat 3820.794 kb on - strandat 3820.794 kb on - strandat 3820.794 kb on - strandat 3820.794 kb on - strandat 3821.227 kb on - strandat 3821.238 kb on - strandat 3821.253 kb on + strandat 3821.254 kb on - strandat 3821.254 kb on - strandat 3821.254 kb on - strandat 3821.305 kb on + strandat 3821.306 kb on - strandat 3821.306 kb on - strandat 3821.306 kb on - strandat 3821.306 kb on - strandat 3821.315 kb on + strandat 3821.315 kb on + strandat 3821.316 kb on - strandat 3821.316 kb on - strandat 3821.316 kb on - strandat 3821.471 kb on + strand, within AO356_16955at 3821.471 kb on + strand, within AO356_16955at 3821.471 kb on + strand, within AO356_16955at 3821.471 kb on + strand, within AO356_16955at 3821.471 kb on + strand, within AO356_16955at 3821.471 kb on + strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.472 kb on - strand, within AO356_16955at 3821.512 kb on + strand, within AO356_16955at 3821.512 kb on + strand, within AO356_16955at 3821.512 kb on + strand, within AO356_16955at 3821.513 kb on - strand, within AO356_16955at 3821.513 kb on - strand, within AO356_16955at 3821.513 kb on - strand, within AO356_16955at 3821.525 kb on + strand, within AO356_16955at 3821.657 kb on + strand, within AO356_16955at 3821.657 kb on + strand, within AO356_16955at 3821.658 kb on - strand, within AO356_16955at 3821.697 kb on + strand, within AO356_16955at 3821.697 kb on + strand, within AO356_16955at 3821.697 kb on + strand, within AO356_16955at 3821.698 kb on - strand, within AO356_16955at 3821.698 kb on - strand, within AO356_16955at 3822.219 kb on + strandat 3822.219 kb on + strandat 3822.219 kb on + strandat 3822.219 kb on + strandat 3822.220 kb on - strandat 3822.220 kb on - strandat 3822.220 kb on - strandat 3822.359 kb on + strandat 3822.359 kb on + strandat 3822.359 kb on + strandat 3822.360 kb on - strandat 3822.360 kb on - strandat 3822.462 kb on + strandat 3822.462 kb on + strandat 3822.492 kb on + strandat 3822.492 kb on + strandat 3822.493 kb on - strandat 3822.512 kb on + strandat 3822.512 kb on + strandat 3822.512 kb on + strandat 3822.512 kb on + strandat 3822.512 kb on + strandat 3822.513 kb on - strandat 3822.573 kb on + strandat 3822.573 kb on + strandat 3822.574 kb on - strandat 3822.574 kb on - strandat 3822.574 kb on - strandat 3822.652 kb on + strandat 3822.653 kb on - strandat 3822.670 kb on + strandat 3822.670 kb on + strandat 3822.670 kb on + strandat 3822.671 kb on - strandat 3822.671 kb on - strandat 3822.680 kb on + strandat 3822.690 kb on + strandat 3822.691 kb on - strandat 3822.691 kb on - strandat 3822.691 kb on - strandat 3822.693 kb on + strandat 3822.693 kb on + strandat 3822.693 kb on + strandat 3822.693 kb on + strandat 3822.693 kb on + strandat 3822.693 kb on + strandat 3822.694 kb on - strandat 3822.694 kb on - strandat 3822.694 kb on - strandat 3822.694 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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3,820,571 + AO356_16950 0.81 +1.5
3,820,571 + AO356_16950 0.81 -0.1
3,820,571 + AO356_16950 0.81 -1.7
3,820,572 - AO356_16950 0.81 -0.5
3,820,572 - AO356_16950 0.81 +0.4
3,820,572 - AO356_16950 0.81 +0.9
3,820,577 + AO356_16950 0.81 -0.2
3,820,577 + AO356_16950 0.81 +0.4
3,820,578 - AO356_16950 0.82 -0.4
3,820,679 + +0.5
3,820,679 + +0.0
3,820,679 + +0.8
3,820,680 - -1.6
3,820,680 - +0.5
3,820,680 - +0.1
3,820,680 - +1.9
3,820,680 - +0.9
3,820,680 - +1.0
3,820,793 + +0.1
3,820,793 + +0.5
3,820,793 + -2.1
3,820,793 + -1.1
3,820,794 - +0.2
3,820,794 - -0.1
3,820,794 - -0.4
3,820,794 - -1.2
3,821,227 - +0.5
3,821,238 - +1.2
3,821,253 + +1.0
3,821,254 - +1.0
3,821,254 - +1.0
3,821,254 - -1.5
3,821,305 + -1.6
3,821,306 - +1.1
3,821,306 - +0.7
3,821,306 - -2.6
3,821,306 - -0.8
3,821,315 + -0.0
3,821,315 + -0.3
3,821,316 - +0.2
3,821,316 - +1.3
3,821,316 - -1.1
3,821,471 + AO356_16955 0.18 -1.5
3,821,471 + AO356_16955 0.18 -2.4
3,821,471 + AO356_16955 0.18 -2.1
3,821,471 + AO356_16955 0.18 -1.5
3,821,471 + AO356_16955 0.18 -0.4
3,821,471 + AO356_16955 0.18 -0.7
3,821,472 - AO356_16955 0.18 -2.4
3,821,472 - AO356_16955 0.18 -1.1
3,821,472 - AO356_16955 0.18 -0.7
3,821,472 - AO356_16955 0.18 -1.3
3,821,472 - AO356_16955 0.18 -1.3
3,821,472 - AO356_16955 0.18 -2.5
3,821,472 - AO356_16955 0.18 +0.3
3,821,472 - AO356_16955 0.18 -1.9
3,821,512 + AO356_16955 0.26 -2.1
3,821,512 + AO356_16955 0.26 -1.7
3,821,512 + AO356_16955 0.26 -2.8
3,821,513 - AO356_16955 0.26 -1.6
3,821,513 - AO356_16955 0.26 -1.6
3,821,513 - AO356_16955 0.26 -2.3
3,821,525 + AO356_16955 0.28 -1.3
3,821,657 + AO356_16955 0.54 -2.4
3,821,657 + AO356_16955 0.54 -0.9
3,821,658 - AO356_16955 0.54 -3.1
3,821,697 + AO356_16955 0.62 -2.7
3,821,697 + AO356_16955 0.62 -1.6
3,821,697 + AO356_16955 0.62 -1.6
3,821,698 - AO356_16955 0.62 +0.3
3,821,698 - AO356_16955 0.62 -1.3
3,822,219 + +0.1
3,822,219 + +0.8
3,822,219 + -0.7
3,822,219 + -0.6
3,822,220 - +1.6
3,822,220 - +1.5
3,822,220 - -0.0
3,822,359 + -0.1
3,822,359 + +0.3
3,822,359 + +0.5
3,822,360 - +1.1
3,822,360 - +0.7
3,822,462 + -1.3
3,822,462 + -3.3
3,822,492 + +0.4
3,822,492 + -1.0
3,822,493 - +1.0
3,822,512 + +1.0
3,822,512 + -0.1
3,822,512 + -2.1
3,822,512 + -2.0
3,822,512 + -1.5
3,822,513 - +2.1
3,822,573 + +0.5
3,822,573 + +1.4
3,822,574 - +1.0
3,822,574 - +0.2
3,822,574 - +3.1
3,822,652 + +1.2
3,822,653 - -0.1
3,822,670 + -0.4
3,822,670 + +0.5
3,822,670 + +1.2
3,822,671 - +1.1
3,822,671 - +0.9
3,822,680 + +0.8
3,822,690 + +1.0
3,822,691 - +0.4
3,822,691 - -0.7
3,822,691 - +1.7
3,822,693 + +0.3
3,822,693 + +1.8
3,822,693 + +0.8
3,822,693 + +0.5
3,822,693 + +0.9
3,822,693 + +0.1
3,822,694 - +1.2
3,822,694 - +1.1
3,822,694 - -1.4
3,822,694 - +0.5

Or see this region's nucleotide sequence