Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16075

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16070 and AO356_16075 are separated by 789 nucleotidesAO356_16075 and AO356_16080 are separated by 22 nucleotides AO356_16070: AO356_16070 - poly(A) polymerase, at 3,633,789 to 3,635,186 _16070 AO356_16075: AO356_16075 - Fis family transcriptional regulator, at 3,635,976 to 3,637,409 _16075 AO356_16080: AO356_16080 - ATPase, at 3,637,432 to 3,640,380 _16080 Position (kb) 3635 3636 3637 3638Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3635.018 kb on - strand, within AO356_16070at 3635.018 kb on - strand, within AO356_16070at 3635.018 kb on - strand, within AO356_16070at 3635.142 kb on - strandat 3635.142 kb on - strandat 3635.142 kb on - strandat 3635.209 kb on - strandat 3635.253 kb on + strandat 3635.253 kb on + strandat 3635.254 kb on - strandat 3635.260 kb on + strandat 3635.260 kb on + strandat 3635.260 kb on + strandat 3635.261 kb on - strandat 3635.276 kb on + strandat 3635.276 kb on + strandat 3635.277 kb on - strandat 3635.277 kb on - strandat 3635.322 kb on + strandat 3635.322 kb on + strandat 3635.322 kb on + strandat 3635.323 kb on - strandat 3635.381 kb on + strandat 3635.381 kb on + strandat 3635.382 kb on - strandat 3635.382 kb on - strandat 3635.382 kb on - strandat 3635.400 kb on + strandat 3635.400 kb on + strandat 3635.401 kb on - strandat 3635.401 kb on - strandat 3635.403 kb on + strandat 3635.565 kb on + strandat 3635.565 kb on + strandat 3635.565 kb on + strandat 3635.566 kb on - strandat 3635.601 kb on + strandat 3635.601 kb on + strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.602 kb on - strandat 3635.627 kb on + strandat 3635.628 kb on - strandat 3635.655 kb on - strandat 3635.655 kb on - strandat 3635.678 kb on + strandat 3635.685 kb on - strandat 3635.706 kb on + strandat 3635.717 kb on + strandat 3635.726 kb on + strandat 3635.726 kb on + strandat 3635.726 kb on + strandat 3635.727 kb on - strandat 3635.777 kb on + strandat 3635.777 kb on + strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.778 kb on - strandat 3635.784 kb on - strandat 3635.784 kb on - strandat 3635.785 kb on + strandat 3635.785 kb on + strandat 3635.829 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.846 kb on + strandat 3635.927 kb on - strandat 3635.927 kb on - strandat 3636.124 kb on + strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075at 3636.125 kb on - strand, within AO356_16075at 3636.338 kb on - strand, within AO356_16075at 3636.496 kb on + strand, within AO356_16075at 3636.496 kb on + strand, within AO356_16075at 3636.497 kb on - strand, within AO356_16075at 3636.497 kb on - strand, within AO356_16075at 3636.625 kb on - strand, within AO356_16075at 3636.938 kb on - strand, within AO356_16075at 3637.127 kb on - strand, within AO356_16075at 3637.127 kb on - strand, within AO356_16075at 3637.177 kb on + strand, within AO356_16075at 3637.333 kb on + strandat 3637.374 kb on - strandat 3637.538 kb on + strandat 3637.538 kb on + strandat 3637.539 kb on - strandat 3637.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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3,635,018 - AO356_16070 0.88 -1.6
3,635,018 - AO356_16070 0.88 -0.6
3,635,018 - AO356_16070 0.88 -2.0
3,635,142 - -2.6
3,635,142 - -1.1
3,635,142 - -1.4
3,635,209 - +1.3
3,635,253 + -1.5
3,635,253 + +0.7
3,635,254 - -0.4
3,635,260 + +0.4
3,635,260 + +0.6
3,635,260 + +1.0
3,635,261 - +0.8
3,635,276 + -0.3
3,635,276 + +1.1
3,635,277 - +0.8
3,635,277 - +1.2
3,635,322 + +0.5
3,635,322 + +1.9
3,635,322 + -0.8
3,635,323 - +1.8
3,635,381 + -0.8
3,635,381 + +0.7
3,635,382 - +1.5
3,635,382 - +0.4
3,635,382 - +0.6
3,635,400 + +1.0
3,635,400 + -0.2
3,635,401 - +0.3
3,635,401 - +0.6
3,635,403 + -0.7
3,635,565 + -1.5
3,635,565 + +0.2
3,635,565 + +0.1
3,635,566 - +1.5
3,635,601 + +0.7
3,635,601 + +0.9
3,635,602 - +0.8
3,635,602 - -0.5
3,635,602 - +1.1
3,635,602 - -1.5
3,635,602 - +0.2
3,635,602 - +0.7
3,635,627 + -0.2
3,635,628 - +0.8
3,635,655 - -0.3
3,635,655 - +0.7
3,635,678 + +0.9
3,635,685 - +0.0
3,635,706 + +1.6
3,635,717 + -0.9
3,635,726 + +2.5
3,635,726 + +1.4
3,635,726 + +0.8
3,635,727 - +0.6
3,635,777 + +0.9
3,635,777 + +0.8
3,635,778 - -0.4
3,635,778 - +0.1
3,635,778 - +0.6
3,635,778 - +0.3
3,635,778 - -0.8
3,635,784 - -0.0
3,635,784 - +0.7
3,635,785 + +0.7
3,635,785 + +0.1
3,635,829 + +0.4
3,635,846 + -0.6
3,635,846 + -0.1
3,635,846 + +1.6
3,635,846 + +0.6
3,635,927 - +1.5
3,635,927 - +0.6
3,636,124 + AO356_16075 0.10 +0.5
3,636,125 - AO356_16075 0.10 +2.3
3,636,125 - AO356_16075 0.10 +2.4
3,636,125 - AO356_16075 0.10 +2.2
3,636,338 - AO356_16075 0.25 +0.1
3,636,496 + AO356_16075 0.36 +1.6
3,636,496 + AO356_16075 0.36 +1.4
3,636,497 - AO356_16075 0.36 +0.8
3,636,497 - AO356_16075 0.36 +2.9
3,636,625 - AO356_16075 0.45 +1.4
3,636,938 - AO356_16075 0.67 +2.1
3,637,127 - AO356_16075 0.80 +3.0
3,637,127 - AO356_16075 0.80 +1.5
3,637,177 + AO356_16075 0.84 +0.7
3,637,333 + +1.7
3,637,374 - +3.6
3,637,538 + +1.9
3,637,538 + +0.8
3,637,539 - +1.2
3,637,560 - -2.4

Or see this region's nucleotide sequence