Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15920 and AO356_15925 are separated by 150 nucleotides AO356_15925 and AO356_15930 overlap by 4 nucleotides AO356_15930 and AO356_15935 are separated by 129 nucleotides
AO356_15920: AO356_15920 - DNA transporter, at 3,604,396 to 3,605,412
_15920
AO356_15925: AO356_15925 - ribosomal large subunit pseudouridine synthase D, at 3,605,563 to 3,606,525
_15925
AO356_15930: AO356_15930 - laccase, at 3,606,522 to 3,607,247
_15930
AO356_15935: AO356_15935 - ATP-dependent chaperone ClpB, at 3,607,377 to 3,609,941
_15935
Position (kb)
3605
3606
3607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3604.695 kb on - strand, within AO356_15920 at 3604.695 kb on - strand, within AO356_15920 at 3605.429 kb on - strand at 3605.464 kb on - strand at 3605.572 kb on - strand at 3605.577 kb on - strand at 3605.577 kb on - strand at 3605.577 kb on - strand at 3605.821 kb on + strand, within AO356_15925 at 3605.821 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.070 kb on + strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.071 kb on - strand, within AO356_15925 at 3606.255 kb on + strand, within AO356_15925 at 3606.316 kb on + strand, within AO356_15925 at 3607.048 kb on + strand, within AO356_15930 at 3607.048 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.098 kb on + strand, within AO356_15930 at 3607.099 kb on - strand, within AO356_15930 at 3607.099 kb on - strand, within AO356_15930 at 3607.099 kb on - strand, within AO356_15930 at 3607.146 kb on + strand, within AO356_15930 at 3607.147 kb on - strand, within AO356_15930 at 3607.246 kb on - strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.305 kb on + strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.306 kb on - strand at 3607.307 kb on + strand at 3607.313 kb on + strand at 3607.314 kb on - strand at 3607.314 kb on - strand at 3607.314 kb on - strand at 3607.345 kb on + strand at 3607.345 kb on + strand at 3607.382 kb on + strand at 3607.383 kb on - strand at 3607.383 kb on - strand at 3607.393 kb on + strand at 3607.405 kb on + strand at 3607.406 kb on - strand at 3607.406 kb on - strand at 3607.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 3,604,695 - AO356_15920 0.29 -1.8 3,604,695 - AO356_15920 0.29 +0.4 3,605,429 - -0.5 3,605,464 - +1.5 3,605,572 - -2.2 3,605,577 - -1.1 3,605,577 - +0.6 3,605,577 - -0.4 3,605,821 + AO356_15925 0.27 -1.5 3,605,821 + AO356_15925 0.27 +0.8 3,606,070 + AO356_15925 0.53 +0.4 3,606,070 + AO356_15925 0.53 +1.9 3,606,070 + AO356_15925 0.53 -1.2 3,606,070 + AO356_15925 0.53 -1.1 3,606,070 + AO356_15925 0.53 -0.9 3,606,070 + AO356_15925 0.53 -1.3 3,606,070 + AO356_15925 0.53 +0.6 3,606,071 - AO356_15925 0.53 -2.8 3,606,071 - AO356_15925 0.53 +1.1 3,606,071 - AO356_15925 0.53 -1.9 3,606,071 - AO356_15925 0.53 -0.4 3,606,071 - AO356_15925 0.53 -0.4 3,606,071 - AO356_15925 0.53 -0.9 3,606,071 - AO356_15925 0.53 -1.4 3,606,255 + AO356_15925 0.72 -2.5 3,606,316 + AO356_15925 0.78 -0.1 3,607,048 + AO356_15930 0.72 -0.2 3,607,048 + AO356_15930 0.72 +0.0 3,607,098 + AO356_15930 0.79 +0.2 3,607,098 + AO356_15930 0.79 +0.4 3,607,098 + AO356_15930 0.79 -1.2 3,607,098 + AO356_15930 0.79 +3.5 3,607,098 + AO356_15930 0.79 +0.6 3,607,098 + AO356_15930 0.79 +0.4 3,607,098 + AO356_15930 0.79 -1.0 3,607,099 - AO356_15930 0.79 -0.1 3,607,099 - AO356_15930 0.79 +1.1 3,607,099 - AO356_15930 0.79 -0.4 3,607,146 + AO356_15930 0.86 +1.1 3,607,147 - AO356_15930 0.86 +1.0 3,607,246 - +0.5 3,607,305 + +0.3 3,607,305 + +0.9 3,607,305 + +0.2 3,607,305 + +0.1 3,607,305 + +1.0 3,607,305 + +0.2 3,607,305 + -0.4 3,607,305 + +0.5 3,607,305 + -2.4 3,607,305 + -1.2 3,607,305 + -1.1 3,607,305 + -0.1 3,607,305 + +0.6 3,607,305 + +2.0 3,607,305 + +0.2 3,607,305 + -2.1 3,607,305 + +0.8 3,607,305 + -0.3 3,607,305 + +0.3 3,607,305 + -0.1 3,607,306 - +0.4 3,607,306 - +0.2 3,607,306 - +0.1 3,607,306 - +0.3 3,607,306 - -1.6 3,607,306 - -0.5 3,607,306 - +1.1 3,607,306 - -1.8 3,607,306 - -0.4 3,607,306 - -1.5 3,607,306 - +2.2 3,607,306 - +0.7 3,607,306 - +0.6 3,607,306 - +0.8 3,607,306 - +0.1 3,607,306 - +0.9 3,607,306 - -0.0 3,607,306 - -0.4 3,607,306 - -0.6 3,607,306 - +0.8 3,607,306 - +1.1 3,607,307 + +0.6 3,607,313 + +0.6 3,607,314 - +0.8 3,607,314 - +1.6 3,607,314 - +0.2 3,607,345 + +0.9 3,607,345 + -0.1 3,607,382 + +0.5 3,607,383 - -0.4 3,607,383 - +1.1 3,607,393 + +0.1 3,607,405 + +0.0 3,607,406 - -0.0 3,607,406 - -1.2 3,607,406 - -0.0
Or see this region's nucleotide sequence