Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15325

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15320 and AO356_15325 overlap by 1 nucleotidesAO356_15325 and AO356_15330 are separated by 168 nucleotides AO356_15320: AO356_15320 - lytic transglycosylase, at 3,469,781 to 3,470,791 _15320 AO356_15325: AO356_15325 - hypothetical protein, at 3,470,791 to 3,471,801 _15325 AO356_15330: AO356_15330 - D-alanyl-D-alanine carboxypeptidase, at 3,471,970 to 3,473,127 _15330 Position (kb) 3470 3471 3472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3469.811 kb on + strandat 3469.874 kb on + strandat 3469.874 kb on + strandat 3469.874 kb on + strandat 3469.875 kb on - strandat 3469.875 kb on - strandat 3469.875 kb on - strandat 3469.875 kb on - strandat 3469.925 kb on + strand, within AO356_15320at 3469.926 kb on - strand, within AO356_15320at 3469.926 kb on - strand, within AO356_15320at 3470.129 kb on + strand, within AO356_15320at 3470.130 kb on - strand, within AO356_15320at 3470.336 kb on + strand, within AO356_15320at 3470.336 kb on + strand, within AO356_15320at 3470.337 kb on - strand, within AO356_15320at 3470.337 kb on - strand, within AO356_15320at 3470.387 kb on + strand, within AO356_15320at 3470.422 kb on + strand, within AO356_15320at 3470.422 kb on + strand, within AO356_15320at 3470.423 kb on - strand, within AO356_15320at 3470.465 kb on + strand, within AO356_15320at 3470.465 kb on + strand, within AO356_15320at 3470.465 kb on + strand, within AO356_15320at 3470.465 kb on + strand, within AO356_15320at 3470.466 kb on - strand, within AO356_15320at 3470.466 kb on - strand, within AO356_15320at 3470.466 kb on - strand, within AO356_15320at 3470.675 kb on + strand, within AO356_15320at 3470.714 kb on + strandat 3470.714 kb on + strandat 3470.716 kb on + strandat 3470.732 kb on + strandat 3470.732 kb on + strandat 3470.732 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.745 kb on + strandat 3470.747 kb on + strandat 3470.789 kb on + strandat 3470.789 kb on + strandat 3470.789 kb on + strandat 3470.790 kb on - strandat 3470.805 kb on + strandat 3470.805 kb on + strandat 3470.805 kb on + strandat 3470.805 kb on + strandat 3470.805 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3470.809 kb on + strandat 3471.632 kb on + strand, within AO356_15325at 3471.632 kb on + strand, within AO356_15325at 3471.632 kb on + strand, within AO356_15325at 3471.632 kb on + strand, within AO356_15325at 3471.633 kb on - strand, within AO356_15325at 3471.799 kb on + strandat 3471.799 kb on + strandat 3471.799 kb on + strandat 3471.799 kb on + strandat 3471.799 kb on + strandat 3471.800 kb on - strandat 3471.800 kb on - strandat 3471.854 kb on + strandat 3471.855 kb on - strandat 3471.855 kb on - strandat 3471.857 kb on + strandat 3471.857 kb on + strandat 3471.858 kb on - strandat 3471.858 kb on - strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.890 kb on + strandat 3471.891 kb on - strandat 3471.891 kb on - strandat 3471.894 kb on + strandat 3471.895 kb on - strandat 3471.895 kb on - strandat 3472.007 kb on + strandat 3472.007 kb on + strandat 3472.008 kb on - strandat 3472.008 kb on - strandat 3472.122 kb on - strand, within AO356_15330at 3472.181 kb on - strand, within AO356_15330at 3472.181 kb on - strand, within AO356_15330at 3472.484 kb on - strand, within AO356_15330at 3472.555 kb on + strand, within AO356_15330at 3472.556 kb on - strand, within AO356_15330at 3472.556 kb on - strand, within AO356_15330at 3472.777 kb on + strand, within AO356_15330at 3472.778 kb on - strand, within AO356_15330at 3472.778 kb on - strand, within AO356_15330at 3472.778 kb on - strand, within AO356_15330

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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3,469,811 + +0.6
3,469,874 + -2.4
3,469,874 + +2.3
3,469,874 + -0.8
3,469,875 - +0.1
3,469,875 - -0.0
3,469,875 - -0.4
3,469,875 - -0.6
3,469,925 + AO356_15320 0.14 +0.4
3,469,926 - AO356_15320 0.14 -2.7
3,469,926 - AO356_15320 0.14 -0.3
3,470,129 + AO356_15320 0.34 -1.0
3,470,130 - AO356_15320 0.35 -1.5
3,470,336 + AO356_15320 0.55 +0.1
3,470,336 + AO356_15320 0.55 -1.5
3,470,337 - AO356_15320 0.55 -1.4
3,470,337 - AO356_15320 0.55 -0.6
3,470,387 + AO356_15320 0.60 +0.1
3,470,422 + AO356_15320 0.63 +1.8
3,470,422 + AO356_15320 0.63 -0.0
3,470,423 - AO356_15320 0.64 +0.2
3,470,465 + AO356_15320 0.68 +1.3
3,470,465 + AO356_15320 0.68 -1.2
3,470,465 + AO356_15320 0.68 -0.6
3,470,465 + AO356_15320 0.68 +1.0
3,470,466 - AO356_15320 0.68 -1.7
3,470,466 - AO356_15320 0.68 -2.6
3,470,466 - AO356_15320 0.68 +0.6
3,470,675 + AO356_15320 0.88 -1.1
3,470,714 + +1.1
3,470,714 + +1.6
3,470,716 + +0.6
3,470,732 + -0.4
3,470,732 + +0.9
3,470,732 + -0.6
3,470,745 + -1.2
3,470,745 + +1.8
3,470,745 + -0.5
3,470,745 + +0.4
3,470,745 + +0.5
3,470,745 + -1.5
3,470,745 + +0.4
3,470,745 + +0.0
3,470,745 + -1.5
3,470,745 + -0.9
3,470,747 + -1.0
3,470,789 + -2.4
3,470,789 + +0.0
3,470,789 + -2.2
3,470,790 - +0.4
3,470,805 + -0.3
3,470,805 + +0.6
3,470,805 + -1.6
3,470,805 + +0.2
3,470,805 + -0.1
3,470,809 + -0.3
3,470,809 + +0.6
3,470,809 + -0.4
3,470,809 + +0.1
3,470,809 + -0.7
3,470,809 + -0.3
3,470,809 + -0.1
3,470,809 + -0.9
3,470,809 + -0.2
3,470,809 + +0.0
3,470,809 + -0.5
3,470,809 + -0.5
3,470,809 + -0.4
3,471,632 + AO356_15325 0.83 -1.3
3,471,632 + AO356_15325 0.83 -1.4
3,471,632 + AO356_15325 0.83 -1.8
3,471,632 + AO356_15325 0.83 -0.8
3,471,633 - AO356_15325 0.83 -1.3
3,471,799 + +0.4
3,471,799 + +0.2
3,471,799 + -0.1
3,471,799 + -0.9
3,471,799 + +1.5
3,471,800 - -0.5
3,471,800 - +0.4
3,471,854 + +0.3
3,471,855 - -0.7
3,471,855 - -0.3
3,471,857 + +1.4
3,471,857 + +0.6
3,471,858 - -0.8
3,471,858 - -0.2
3,471,890 + -2.1
3,471,890 + -0.3
3,471,890 + -1.4
3,471,890 + +2.0
3,471,890 + -0.1
3,471,890 + +0.1
3,471,890 + +1.8
3,471,890 + +0.5
3,471,890 + +1.5
3,471,891 - +0.9
3,471,891 - +1.6
3,471,894 + +1.1
3,471,895 - -1.4
3,471,895 - +0.7
3,472,007 + -1.7
3,472,007 + -1.9
3,472,008 - -2.8
3,472,008 - -0.6
3,472,122 - AO356_15330 0.13 -0.6
3,472,181 - AO356_15330 0.18 -2.2
3,472,181 - AO356_15330 0.18 -0.3
3,472,484 - AO356_15330 0.44 -1.6
3,472,555 + AO356_15330 0.51 -1.4
3,472,556 - AO356_15330 0.51 -1.4
3,472,556 - AO356_15330 0.51 -0.7
3,472,777 + AO356_15330 0.70 +1.0
3,472,778 - AO356_15330 0.70 +0.1
3,472,778 - AO356_15330 0.70 +0.0
3,472,778 - AO356_15330 0.70 +0.2

Or see this region's nucleotide sequence