Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14930 and AO356_14935 are separated by 46 nucleotides AO356_14935 and AO356_14940 are separated by 16 nucleotides AO356_14940 and AO356_14945 are separated by 248 nucleotides AO356_14945 and AO356_14950 overlap by 4 nucleotides
AO356_14930: AO356_14930 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,378,161 to 3,379,294
_14930
AO356_14935: AO356_14935 - riboflavin synthase subunit alpha, at 3,379,341 to 3,380,018
_14935
AO356_14940: AO356_14940 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,380,035 to 3,381,126
_14940
AO356_14945: AO356_14945 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,381,375 to 3,381,851
_14945
AO356_14950: AO356_14950 - antitermination protein NusB, at 3,381,848 to 3,382,348
_14950
Position (kb)
3380
3381
3382 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3379.290 kb on + strand at 3379.290 kb on + strand at 3379.291 kb on - strand at 3379.291 kb on - strand at 3379.291 kb on - strand at 3379.291 kb on - strand at 3379.292 kb on + strand at 3379.292 kb on + strand at 3379.292 kb on + strand at 3379.292 kb on + strand at 3379.923 kb on - strand, within AO356_14935 at 3379.923 kb on - strand, within AO356_14935 at 3380.046 kb on + strand at 3380.046 kb on + strand at 3380.046 kb on + strand at 3380.047 kb on - strand at 3380.047 kb on - strand at 3380.047 kb on - strand at 3380.047 kb on - strand at 3380.357 kb on + strand, within AO356_14940 at 3380.358 kb on - strand, within AO356_14940 at 3380.646 kb on + strand, within AO356_14940 at 3380.646 kb on + strand, within AO356_14940 at 3380.647 kb on - strand, within AO356_14940 at 3380.647 kb on - strand, within AO356_14940 at 3380.647 kb on - strand, within AO356_14940 at 3380.647 kb on - strand, within AO356_14940 at 3380.757 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.762 kb on + strand, within AO356_14940 at 3380.763 kb on - strand, within AO356_14940 at 3380.763 kb on - strand, within AO356_14940 at 3380.763 kb on - strand, within AO356_14940 at 3380.989 kb on + strand, within AO356_14940 at 3380.989 kb on + strand, within AO356_14940 at 3380.989 kb on + strand, within AO356_14940 at 3380.989 kb on + strand, within AO356_14940 at 3381.072 kb on + strand at 3381.104 kb on + strand at 3381.104 kb on + strand at 3381.109 kb on + strand at 3381.109 kb on + strand at 3381.109 kb on + strand at 3381.124 kb on + strand at 3381.158 kb on + strand at 3381.158 kb on + strand at 3381.158 kb on + strand at 3381.158 kb on + strand at 3381.164 kb on + strand at 3381.168 kb on + strand at 3381.168 kb on + strand at 3381.168 kb on + strand at 3381.168 kb on + strand at 3381.168 kb on + strand at 3381.168 kb on + strand at 3381.235 kb on + strand at 3381.317 kb on + strand at 3381.317 kb on + strand at 3381.317 kb on + strand at 3381.320 kb on + strand at 3381.340 kb on + strand at 3381.340 kb on + strand at 3381.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 3,379,290 + +1.6 3,379,290 + -0.2 3,379,291 - +0.2 3,379,291 - +0.9 3,379,291 - +1.3 3,379,291 - +0.4 3,379,292 + -0.6 3,379,292 + +1.1 3,379,292 + -0.3 3,379,292 + +0.6 3,379,923 - AO356_14935 0.86 +3.1 3,379,923 - AO356_14935 0.86 +3.4 3,380,046 + +0.5 3,380,046 + -0.5 3,380,046 + -1.8 3,380,047 - +1.5 3,380,047 - +1.1 3,380,047 - +1.1 3,380,047 - +0.5 3,380,357 + AO356_14940 0.29 +1.3 3,380,358 - AO356_14940 0.30 +0.3 3,380,646 + AO356_14940 0.56 +0.9 3,380,646 + AO356_14940 0.56 +0.1 3,380,647 - AO356_14940 0.56 +0.1 3,380,647 - AO356_14940 0.56 +2.1 3,380,647 - AO356_14940 0.56 +1.3 3,380,647 - AO356_14940 0.56 +1.7 3,380,757 + AO356_14940 0.66 +1.2 3,380,762 + AO356_14940 0.67 +1.8 3,380,762 + AO356_14940 0.67 +1.0 3,380,762 + AO356_14940 0.67 +2.2 3,380,762 + AO356_14940 0.67 +1.2 3,380,762 + AO356_14940 0.67 +1.7 3,380,762 + AO356_14940 0.67 +2.6 3,380,762 + AO356_14940 0.67 -0.0 3,380,763 - AO356_14940 0.67 +1.7 3,380,763 - AO356_14940 0.67 +1.9 3,380,763 - AO356_14940 0.67 +1.1 3,380,989 + AO356_14940 0.87 +0.3 3,380,989 + AO356_14940 0.87 +1.0 3,380,989 + AO356_14940 0.87 +1.2 3,380,989 + AO356_14940 0.87 +0.4 3,381,072 + +0.6 3,381,104 + +1.4 3,381,104 + -1.3 3,381,109 + +1.2 3,381,109 + -1.1 3,381,109 + -2.1 3,381,124 + +0.0 3,381,158 + -0.0 3,381,158 + +0.5 3,381,158 + +2.1 3,381,158 + +0.2 3,381,164 + -0.7 3,381,168 + -0.6 3,381,168 + +1.5 3,381,168 + +0.8 3,381,168 + +0.2 3,381,168 + +0.8 3,381,168 + -0.1 3,381,235 + +0.5 3,381,317 + +0.6 3,381,317 + +0.3 3,381,317 + +0.6 3,381,320 + +0.7 3,381,340 + +1.9 3,381,340 + +0.8 3,381,340 + +0.4
Or see this region's nucleotide sequence