Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_12315 and AO356_12320 overlap by 4 nucleotides AO356_12320 and AO356_12325 are separated by 0 nucleotides AO356_12325 and AO356_12330 overlap by 4 nucleotides
AO356_12315: AO356_12315 - type VI secretion protein IcmF, at 2,809,856 to 2,813,356
_12315
AO356_12320: AO356_12320 - type VI secretion system protein ImpM, at 2,813,353 to 2,814,006
_12320
AO356_12325: AO356_12325 - serine/threonine protein phosphatase, at 2,814,007 to 2,814,738
_12325
AO356_12330: AO356_12330 - serine/threonine protein kinase, at 2,814,735 to 2,817,839
_12330
Position (kb)
2814
2815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.051 kb on + strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.052 kb on - strand at 2813.276 kb on + strand at 2813.277 kb on - strand at 2813.277 kb on - strand at 2813.353 kb on - strand at 2813.353 kb on - strand at 2813.358 kb on + strand at 2813.359 kb on - strand at 2813.371 kb on + strand at 2813.506 kb on + strand, within AO356_12320 at 2813.506 kb on + strand, within AO356_12320 at 2813.506 kb on + strand, within AO356_12320 at 2813.506 kb on + strand, within AO356_12320 at 2813.506 kb on + strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.507 kb on - strand, within AO356_12320 at 2813.609 kb on - strand, within AO356_12320 at 2813.782 kb on + strand, within AO356_12320 at 2813.782 kb on + strand, within AO356_12320 at 2813.782 kb on + strand, within AO356_12320 at 2813.782 kb on + strand, within AO356_12320 at 2813.782 kb on + strand, within AO356_12320 at 2813.783 kb on - strand, within AO356_12320 at 2813.783 kb on - strand, within AO356_12320 at 2813.783 kb on - strand, within AO356_12320 at 2813.783 kb on - strand, within AO356_12320 at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.004 kb on + strand at 2814.005 kb on - strand at 2814.005 kb on - strand at 2814.157 kb on + strand, within AO356_12325 at 2814.157 kb on + strand, within AO356_12325 at 2814.157 kb on + strand, within AO356_12325 at 2814.157 kb on + strand, within AO356_12325 at 2814.158 kb on - strand, within AO356_12325 at 2814.158 kb on - strand, within AO356_12325 at 2814.158 kb on - strand, within AO356_12325 at 2814.220 kb on + strand, within AO356_12325 at 2814.220 kb on + strand, within AO356_12325 at 2814.220 kb on + strand, within AO356_12325 at 2814.220 kb on + strand, within AO356_12325 at 2814.221 kb on - strand, within AO356_12325 at 2814.221 kb on - strand, within AO356_12325 at 2814.221 kb on - strand, within AO356_12325 at 2814.221 kb on - strand, within AO356_12325 at 2814.221 kb on - strand, within AO356_12325 at 2814.376 kb on + strand, within AO356_12325 at 2814.424 kb on + strand, within AO356_12325 at 2814.424 kb on + strand, within AO356_12325 at 2814.424 kb on + strand, within AO356_12325 at 2814.425 kb on - strand, within AO356_12325 at 2814.425 kb on - strand, within AO356_12325 at 2814.425 kb on - strand, within AO356_12325 at 2814.425 kb on - strand, within AO356_12325 at 2814.425 kb on - strand, within AO356_12325 at 2814.571 kb on + strand, within AO356_12325 at 2814.571 kb on + strand, within AO356_12325 at 2814.571 kb on + strand, within AO356_12325 at 2814.571 kb on + strand, within AO356_12325 at 2814.571 kb on + strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.572 kb on - strand, within AO356_12325 at 2814.629 kb on + strand, within AO356_12325 at 2814.630 kb on - strand, within AO356_12325 at 2814.630 kb on - strand, within AO356_12325 at 2814.630 kb on - strand, within AO356_12325 at 2814.630 kb on - strand, within AO356_12325 at 2814.813 kb on + strand at 2814.814 kb on - strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.987 kb on + strand at 2814.988 kb on - strand at 2814.988 kb on - strand at 2814.988 kb on - strand at 2814.988 kb on - strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.990 kb on + strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2814.991 kb on - strand at 2815.005 kb on + strand at 2815.005 kb on + strand at 2815.005 kb on + strand at 2815.006 kb on - strand at 2815.071 kb on + strand, within AO356_12330 at 2815.071 kb on + strand, within AO356_12330 at 2815.071 kb on + strand, within AO356_12330 at 2815.071 kb on + strand, within AO356_12330 at 2815.071 kb on + strand, within AO356_12330 at 2815.071 kb on + strand, within AO356_12330 at 2815.072 kb on - strand, within AO356_12330 at 2815.072 kb on - strand, within AO356_12330 at 2815.072 kb on - strand, within AO356_12330 at 2815.072 kb on - strand, within AO356_12330 at 2815.072 kb on - strand, within AO356_12330 at 2815.101 kb on + strand, within AO356_12330 at 2815.101 kb on + strand, within AO356_12330 at 2815.101 kb on + strand, within AO356_12330 at 2815.102 kb on - strand, within AO356_12330 at 2815.251 kb on - strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.260 kb on + strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.261 kb on - strand, within AO356_12330 at 2815.314 kb on + strand, within AO356_12330 at 2815.314 kb on + strand, within AO356_12330 at 2815.315 kb on - strand, within AO356_12330 at 2815.362 kb on + strand, within AO356_12330 at 2815.362 kb on + strand, within AO356_12330 at 2815.363 kb on - strand, within AO356_12330 at 2815.363 kb on - strand, within AO356_12330 at 2815.363 kb on - strand, within AO356_12330 at 2815.363 kb on - strand, within AO356_12330 at 2815.363 kb on - strand, within AO356_12330 at 2815.365 kb on - strand, within AO356_12330 at 2815.526 kb on + strand, within AO356_12330 at 2815.659 kb on + strand, within AO356_12330 at 2815.660 kb on - strand, within AO356_12330 at 2815.660 kb on - strand, within AO356_12330 at 2815.660 kb on - strand, within AO356_12330 at 2815.660 kb on - strand, within AO356_12330 at 2815.660 kb on - strand, within AO356_12330
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 2,813,051 + +1.5 2,813,051 + -0.3 2,813,051 + +0.5 2,813,051 + +0.0 2,813,051 + -1.1 2,813,051 + +0.8 2,813,051 + +0.3 2,813,052 - +0.2 2,813,052 - -1.9 2,813,052 - -1.0 2,813,052 - -0.2 2,813,052 - +2.2 2,813,052 - +1.1 2,813,052 - +1.1 2,813,276 + +0.1 2,813,277 - +0.9 2,813,277 - +2.4 2,813,353 - -0.5 2,813,353 - -0.9 2,813,358 + +0.3 2,813,359 - +2.0 2,813,371 + +1.2 2,813,506 + AO356_12320 0.23 -0.2 2,813,506 + AO356_12320 0.23 +1.6 2,813,506 + AO356_12320 0.23 -0.4 2,813,506 + AO356_12320 0.23 +0.5 2,813,506 + AO356_12320 0.23 -3.0 2,813,507 - AO356_12320 0.24 +0.3 2,813,507 - AO356_12320 0.24 -0.5 2,813,507 - AO356_12320 0.24 -2.9 2,813,507 - AO356_12320 0.24 +0.5 2,813,507 - AO356_12320 0.24 +0.9 2,813,507 - AO356_12320 0.24 +0.9 2,813,507 - AO356_12320 0.24 -0.1 2,813,507 - AO356_12320 0.24 +0.2 2,813,507 - AO356_12320 0.24 +0.6 2,813,507 - AO356_12320 0.24 +2.0 2,813,507 - AO356_12320 0.24 +0.3 2,813,609 - AO356_12320 0.39 +0.8 2,813,782 + AO356_12320 0.66 +1.0 2,813,782 + AO356_12320 0.66 -0.5 2,813,782 + AO356_12320 0.66 -1.1 2,813,782 + AO356_12320 0.66 +1.1 2,813,782 + AO356_12320 0.66 +2.6 2,813,783 - AO356_12320 0.66 +0.9 2,813,783 - AO356_12320 0.66 +0.1 2,813,783 - AO356_12320 0.66 +1.5 2,813,783 - AO356_12320 0.66 -0.4 2,814,004 + -0.6 2,814,004 + +1.5 2,814,004 + -0.1 2,814,004 + +0.1 2,814,004 + -0.6 2,814,004 + +0.1 2,814,004 + -2.4 2,814,004 + +0.9 2,814,004 + +1.4 2,814,004 + +0.6 2,814,005 - +0.5 2,814,005 - +0.2 2,814,157 + AO356_12325 0.20 -0.2 2,814,157 + AO356_12325 0.20 +1.4 2,814,157 + AO356_12325 0.20 -1.2 2,814,157 + AO356_12325 0.20 -0.9 2,814,158 - AO356_12325 0.21 +1.3 2,814,158 - AO356_12325 0.21 -0.2 2,814,158 - AO356_12325 0.21 +0.1 2,814,220 + AO356_12325 0.29 +2.8 2,814,220 + AO356_12325 0.29 -1.5 2,814,220 + AO356_12325 0.29 -0.4 2,814,220 + AO356_12325 0.29 +1.8 2,814,221 - AO356_12325 0.29 -0.2 2,814,221 - AO356_12325 0.29 +1.8 2,814,221 - AO356_12325 0.29 +0.3 2,814,221 - AO356_12325 0.29 +1.1 2,814,221 - AO356_12325 0.29 -0.8 2,814,376 + AO356_12325 0.50 +0.9 2,814,424 + AO356_12325 0.57 -0.5 2,814,424 + AO356_12325 0.57 +0.8 2,814,424 + AO356_12325 0.57 +1.4 2,814,425 - AO356_12325 0.57 +0.6 2,814,425 - AO356_12325 0.57 +0.1 2,814,425 - AO356_12325 0.57 +0.6 2,814,425 - AO356_12325 0.57 +0.9 2,814,425 - AO356_12325 0.57 +1.0 2,814,571 + AO356_12325 0.77 -0.4 2,814,571 + AO356_12325 0.77 +1.3 2,814,571 + AO356_12325 0.77 +0.1 2,814,571 + AO356_12325 0.77 +0.5 2,814,571 + AO356_12325 0.77 -1.9 2,814,572 - AO356_12325 0.77 +0.7 2,814,572 - AO356_12325 0.77 +0.1 2,814,572 - AO356_12325 0.77 +0.4 2,814,572 - AO356_12325 0.77 +1.1 2,814,572 - AO356_12325 0.77 +0.6 2,814,572 - AO356_12325 0.77 -0.4 2,814,572 - AO356_12325 0.77 +0.3 2,814,572 - AO356_12325 0.77 +1.7 2,814,572 - AO356_12325 0.77 +1.9 2,814,629 + AO356_12325 0.85 +0.3 2,814,630 - AO356_12325 0.85 -0.1 2,814,630 - AO356_12325 0.85 -0.5 2,814,630 - AO356_12325 0.85 +0.2 2,814,630 - AO356_12325 0.85 -0.6 2,814,813 + +0.8 2,814,814 - +1.2 2,814,987 + -1.6 2,814,987 + -1.4 2,814,987 + +1.3 2,814,987 + +0.0 2,814,987 + -1.9 2,814,987 + -0.6 2,814,987 + +1.2 2,814,987 + -1.0 2,814,987 + +0.5 2,814,987 + -0.1 2,814,987 + +1.2 2,814,987 + -0.1 2,814,988 - +0.6 2,814,988 - +0.2 2,814,988 - -0.1 2,814,988 - +0.8 2,814,990 + +2.2 2,814,990 + -1.0 2,814,990 + -1.0 2,814,990 + +0.2 2,814,990 + +0.1 2,814,990 + -1.1 2,814,990 + +0.0 2,814,990 + -0.8 2,814,990 + -1.1 2,814,990 + +0.2 2,814,990 + +0.4 2,814,990 + +0.8 2,814,990 + +0.3 2,814,990 + +1.4 2,814,991 - -2.4 2,814,991 - -1.4 2,814,991 - +1.1 2,814,991 - +0.3 2,814,991 - +0.5 2,814,991 - -0.1 2,814,991 - +0.9 2,814,991 - -2.2 2,814,991 - -0.7 2,814,991 - -0.4 2,814,991 - -0.4 2,814,991 - -0.5 2,814,991 - -0.7 2,815,005 + +0.8 2,815,005 + +1.2 2,815,005 + +0.1 2,815,006 - +1.8 2,815,071 + AO356_12330 0.11 +0.2 2,815,071 + AO356_12330 0.11 -2.0 2,815,071 + AO356_12330 0.11 -2.6 2,815,071 + AO356_12330 0.11 -1.6 2,815,071 + AO356_12330 0.11 +0.7 2,815,071 + AO356_12330 0.11 +0.5 2,815,072 - AO356_12330 0.11 +0.4 2,815,072 - AO356_12330 0.11 -0.1 2,815,072 - AO356_12330 0.11 +0.9 2,815,072 - AO356_12330 0.11 -0.3 2,815,072 - AO356_12330 0.11 +0.2 2,815,101 + AO356_12330 0.12 -1.0 2,815,101 + AO356_12330 0.12 +0.2 2,815,101 + AO356_12330 0.12 -0.9 2,815,102 - AO356_12330 0.12 +0.3 2,815,251 - AO356_12330 0.17 +1.0 2,815,260 + AO356_12330 0.17 +1.4 2,815,260 + AO356_12330 0.17 -0.4 2,815,260 + AO356_12330 0.17 +0.1 2,815,260 + AO356_12330 0.17 -2.2 2,815,260 + AO356_12330 0.17 +1.3 2,815,260 + AO356_12330 0.17 -0.4 2,815,260 + AO356_12330 0.17 -0.7 2,815,260 + AO356_12330 0.17 -3.1 2,815,261 - AO356_12330 0.17 -0.8 2,815,261 - AO356_12330 0.17 +0.5 2,815,261 - AO356_12330 0.17 +0.1 2,815,261 - AO356_12330 0.17 -2.9 2,815,261 - AO356_12330 0.17 -0.3 2,815,261 - AO356_12330 0.17 -1.4 2,815,261 - AO356_12330 0.17 -0.0 2,815,261 - AO356_12330 0.17 +0.1 2,815,261 - AO356_12330 0.17 -3.0 2,815,261 - AO356_12330 0.17 -1.2 2,815,261 - AO356_12330 0.17 +0.7 2,815,314 + AO356_12330 0.19 +0.6 2,815,314 + AO356_12330 0.19 +0.2 2,815,315 - AO356_12330 0.19 +0.2 2,815,362 + AO356_12330 0.20 -0.1 2,815,362 + AO356_12330 0.20 -1.1 2,815,363 - AO356_12330 0.20 -1.6 2,815,363 - AO356_12330 0.20 +0.4 2,815,363 - AO356_12330 0.20 +0.9 2,815,363 - AO356_12330 0.20 +0.2 2,815,363 - AO356_12330 0.20 +0.7 2,815,365 - AO356_12330 0.20 +0.4 2,815,526 + AO356_12330 0.25 -0.6 2,815,659 + AO356_12330 0.30 +0.9 2,815,660 - AO356_12330 0.30 +0.2 2,815,660 - AO356_12330 0.30 +0.1 2,815,660 - AO356_12330 0.30 +0.1 2,815,660 - AO356_12330 0.30 +0.6 2,815,660 - AO356_12330 0.30 -1.8
Or see this region's nucleotide sequence