Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11635

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11630 and AO356_11635 are separated by 5 nucleotidesAO356_11635 and AO356_11640 are separated by 20 nucleotides AO356_11630: AO356_11630 - DNA gyrase subunit B, at 2,633,225 to 2,635,642 _11630 AO356_11635: AO356_11635 - recombinase RecF, at 2,635,648 to 2,636,751 _11635 AO356_11640: AO356_11640 - DNA polymerase III subunit beta, at 2,636,772 to 2,637,875 _11640 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2635.739 kb on - strandat 2635.751 kb on - strandat 2635.751 kb on - strandat 2635.751 kb on - strandat 2635.751 kb on - strandat 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.778 kb on - strand, within AO356_11635at 2635.851 kb on - strand, within AO356_11635at 2635.851 kb on - strand, within AO356_11635at 2635.851 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.855 kb on - strand, within AO356_11635at 2635.919 kb on - strand, within AO356_11635at 2635.919 kb on - strand, within AO356_11635at 2635.919 kb on - strand, within AO356_11635at 2635.919 kb on - strand, within AO356_11635at 2635.919 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2635.957 kb on - strand, within AO356_11635at 2636.085 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.088 kb on - strand, within AO356_11635at 2636.163 kb on - strand, within AO356_11635at 2636.163 kb on - strand, within AO356_11635at 2636.163 kb on - strand, within AO356_11635at 2636.175 kb on - strand, within AO356_11635at 2636.175 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.245 kb on - strand, within AO356_11635at 2636.509 kb on - strand, within AO356_11635at 2636.564 kb on + strand, within AO356_11635at 2636.666 kb on + strandat 2636.667 kb on - strandat 2636.673 kb on + strandat 2636.674 kb on - strandat 2636.674 kb on - strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.743 kb on + strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.744 kb on - strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.753 kb on + strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.754 kb on - strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.773 kb on + strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strandat 2636.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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2,635,739 - -1.7
2,635,751 - -1.1
2,635,751 - -2.5
2,635,751 - -1.7
2,635,751 - -2.3
2,635,778 - AO356_11635 0.12 -1.3
2,635,778 - AO356_11635 0.12 -1.7
2,635,778 - AO356_11635 0.12 -1.3
2,635,778 - AO356_11635 0.12 -2.3
2,635,778 - AO356_11635 0.12 -1.5
2,635,778 - AO356_11635 0.12 -1.7
2,635,778 - AO356_11635 0.12 -0.6
2,635,778 - AO356_11635 0.12 -2.6
2,635,778 - AO356_11635 0.12 -1.4
2,635,851 - AO356_11635 0.18 -1.3
2,635,851 - AO356_11635 0.18 -0.7
2,635,851 - AO356_11635 0.18 -1.1
2,635,855 - AO356_11635 0.19 -1.6
2,635,855 - AO356_11635 0.19 -0.6
2,635,855 - AO356_11635 0.19 -2.8
2,635,855 - AO356_11635 0.19 -2.3
2,635,855 - AO356_11635 0.19 -1.7
2,635,855 - AO356_11635 0.19 +0.6
2,635,855 - AO356_11635 0.19 -1.8
2,635,855 - AO356_11635 0.19 -2.2
2,635,919 - AO356_11635 0.25 -0.8
2,635,919 - AO356_11635 0.25 -1.5
2,635,919 - AO356_11635 0.25 -2.8
2,635,919 - AO356_11635 0.25 -2.2
2,635,919 - AO356_11635 0.25 -0.5
2,635,957 - AO356_11635 0.28 -1.2
2,635,957 - AO356_11635 0.28 +0.3
2,635,957 - AO356_11635 0.28 -0.5
2,635,957 - AO356_11635 0.28 -1.7
2,635,957 - AO356_11635 0.28 -2.1
2,635,957 - AO356_11635 0.28 -0.6
2,636,085 - AO356_11635 0.40 -2.2
2,636,088 - AO356_11635 0.40 -4.2
2,636,088 - AO356_11635 0.40 -2.3
2,636,088 - AO356_11635 0.40 -0.7
2,636,088 - AO356_11635 0.40 -1.5
2,636,088 - AO356_11635 0.40 -3.1
2,636,088 - AO356_11635 0.40 +1.1
2,636,088 - AO356_11635 0.40 -2.1
2,636,163 - AO356_11635 0.47 +0.0
2,636,163 - AO356_11635 0.47 -1.8
2,636,163 - AO356_11635 0.47 -0.6
2,636,175 - AO356_11635 0.48 -0.1
2,636,175 - AO356_11635 0.48 -2.4
2,636,245 - AO356_11635 0.54 -1.8
2,636,245 - AO356_11635 0.54 -2.2
2,636,245 - AO356_11635 0.54 +0.0
2,636,245 - AO356_11635 0.54 -1.2
2,636,245 - AO356_11635 0.54 -0.7
2,636,245 - AO356_11635 0.54 -2.0
2,636,245 - AO356_11635 0.54 -0.5
2,636,509 - AO356_11635 0.78 -2.8
2,636,564 + AO356_11635 0.83 -2.3
2,636,666 + -1.9
2,636,667 - -2.0
2,636,673 + -2.4
2,636,674 - -1.6
2,636,674 - -3.1
2,636,743 + -1.0
2,636,743 + -1.9
2,636,743 + -1.7
2,636,743 + -0.4
2,636,743 + -3.3
2,636,743 + -1.2
2,636,743 + -0.0
2,636,744 - -2.3
2,636,744 - -1.7
2,636,744 - -1.8
2,636,744 - -0.8
2,636,744 - -1.0
2,636,744 - -0.8
2,636,744 - +0.2
2,636,744 - -4.4
2,636,753 + -2.2
2,636,753 + -3.0
2,636,753 + -1.5
2,636,753 + -1.0
2,636,753 + -1.2
2,636,753 + -0.1
2,636,753 + -0.4
2,636,753 + -2.6
2,636,753 + -1.6
2,636,753 + -1.5
2,636,753 + +0.1
2,636,753 + +0.2
2,636,754 - -1.1
2,636,754 - +0.7
2,636,754 - -0.6
2,636,754 - -1.2
2,636,754 - +0.7
2,636,754 - -0.7
2,636,754 - -0.0
2,636,754 - +0.9
2,636,773 + -0.6
2,636,773 + -1.6
2,636,773 + -2.8
2,636,773 + -2.2
2,636,773 + -0.7
2,636,773 + -0.5
2,636,773 + -1.9
2,636,774 - +0.3
2,636,774 - -0.7
2,636,774 - +1.8
2,636,774 - -0.8
2,636,774 - -1.3
2,636,774 - +1.9
2,636,774 - +0.5
2,636,774 - -0.1

Or see this region's nucleotide sequence