Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10880

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10875 and AO356_10880 are separated by 319 nucleotidesAO356_10880 and AO356_10885 are separated by 1 nucleotidesAO356_10885 and AO356_10890 are separated by 57 nucleotidesAO356_10890 and AO356_10895 are separated by 106 nucleotides AO356_10875: AO356_10875 - acetyl-CoA hydrolase, at 2,479,542 to 2,481,035 _10875 AO356_10880: AO356_10880 - hypothetical protein, at 2,481,355 to 2,481,570 _10880 AO356_10885: AO356_10885 - hypothetical protein, at 2,481,572 to 2,481,835 _10885 AO356_10890: AO356_10890 - holliday junction resolvasome, helicase subunit, at 2,481,893 to 2,482,210 _10890 AO356_10895: AO356_10895 - Holliday junction resolvase, at 2,482,317 to 2,482,625 _10895 Position (kb) 2481 2482Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.397 kb on + strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.398 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.493 kb on - strand, within AO356_10875at 2480.523 kb on + strand, within AO356_10875at 2480.523 kb on + strand, within AO356_10875at 2480.523 kb on + strand, within AO356_10875at 2480.523 kb on + strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.524 kb on - strand, within AO356_10875at 2480.600 kb on + strand, within AO356_10875at 2480.600 kb on + strand, within AO356_10875at 2480.600 kb on + strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.601 kb on - strand, within AO356_10875at 2480.628 kb on + strand, within AO356_10875at 2480.628 kb on + strand, within AO356_10875at 2480.628 kb on + strand, within AO356_10875at 2480.628 kb on + strand, within AO356_10875at 2480.629 kb on - strand, within AO356_10875at 2480.629 kb on - strand, within AO356_10875at 2480.629 kb on - strand, within AO356_10875at 2480.629 kb on - strand, within AO356_10875at 2480.907 kb on + strandat 2480.907 kb on + strandat 2480.907 kb on + strandat 2480.907 kb on + strandat 2480.907 kb on + strandat 2480.907 kb on + strandat 2480.908 kb on - strandat 2480.908 kb on - strandat 2480.928 kb on + strandat 2480.928 kb on + strandat 2480.928 kb on + strandat 2480.929 kb on - strandat 2480.960 kb on + strandat 2480.960 kb on + strandat 2480.960 kb on + strandat 2480.960 kb on + strandat 2480.961 kb on - strandat 2480.961 kb on - strandat 2480.969 kb on + strandat 2481.036 kb on + strandat 2481.062 kb on + strandat 2481.062 kb on + strandat 2481.063 kb on - strandat 2481.063 kb on - strandat 2481.197 kb on - strandat 2481.221 kb on - strandat 2481.257 kb on - strandat 2481.269 kb on + strandat 2481.273 kb on + strandat 2481.320 kb on + strandat 2481.320 kb on + strandat 2481.321 kb on - strandat 2481.321 kb on - strandat 2481.321 kb on - strandat 2481.325 kb on - strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.363 kb on + strandat 2481.364 kb on - strandat 2481.364 kb on - strandat 2481.364 kb on - strandat 2481.364 kb on - strandat 2481.364 kb on - strandat 2481.538 kb on + strand, within AO356_10880at 2481.701 kb on + strand, within AO356_10885at 2481.702 kb on - strand, within AO356_10885at 2481.702 kb on - strand, within AO356_10885at 2481.702 kb on - strand, within AO356_10885at 2481.709 kb on + strand, within AO356_10885at 2481.709 kb on + strand, within AO356_10885at 2481.719 kb on - strand, within AO356_10885at 2481.719 kb on - strand, within AO356_10885at 2481.719 kb on - strand, within AO356_10885at 2481.719 kb on - strand, within AO356_10885at 2481.720 kb on + strand, within AO356_10885at 2481.720 kb on + strand, within AO356_10885at 2481.720 kb on + strand, within AO356_10885at 2481.721 kb on - strand, within AO356_10885at 2481.733 kb on + strand, within AO356_10885at 2481.734 kb on - strand, within AO356_10885at 2481.738 kb on + strand, within AO356_10885at 2481.739 kb on - strand, within AO356_10885at 2481.739 kb on - strand, within AO356_10885at 2481.739 kb on - strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.799 kb on + strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.800 kb on - strand, within AO356_10885at 2481.803 kb on - strand, within AO356_10885at 2481.803 kb on - strand, within AO356_10885at 2481.853 kb on + strandat 2481.853 kb on + strandat 2482.139 kb on + strand, within AO356_10890at 2482.139 kb on + strand, within AO356_10890at 2482.139 kb on + strand, within AO356_10890at 2482.139 kb on + strand, within AO356_10890at 2482.140 kb on - strand, within AO356_10890at 2482.140 kb on - strand, within AO356_10890at 2482.326 kb on + strandat 2482.326 kb on + strandat 2482.327 kb on - strandat 2482.327 kb on - strandat 2482.463 kb on + strand, within AO356_10895at 2482.463 kb on + strand, within AO356_10895at 2482.463 kb on + strand, within AO356_10895at 2482.463 kb on + strand, within AO356_10895at 2482.463 kb on + strand, within AO356_10895at 2482.464 kb on - strand, within AO356_10895at 2482.554 kb on + strand, within AO356_10895at 2482.554 kb on + strand, within AO356_10895at 2482.555 kb on - strand, within AO356_10895at 2482.555 kb on - strand, within AO356_10895

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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2,480,397 + AO356_10875 0.57 -0.4
2,480,397 + AO356_10875 0.57 +0.4
2,480,397 + AO356_10875 0.57 +1.2
2,480,397 + AO356_10875 0.57 +0.6
2,480,397 + AO356_10875 0.57 -0.1
2,480,397 + AO356_10875 0.57 +1.2
2,480,397 + AO356_10875 0.57 -1.9
2,480,397 + AO356_10875 0.57 +0.4
2,480,397 + AO356_10875 0.57 -0.4
2,480,397 + AO356_10875 0.57 -0.5
2,480,397 + AO356_10875 0.57 +0.9
2,480,397 + AO356_10875 0.57 -0.4
2,480,398 - AO356_10875 0.57 +0.2
2,480,398 - AO356_10875 0.57 -1.7
2,480,398 - AO356_10875 0.57 +1.8
2,480,398 - AO356_10875 0.57 -0.4
2,480,398 - AO356_10875 0.57 -0.9
2,480,398 - AO356_10875 0.57 +0.5
2,480,398 - AO356_10875 0.57 -0.8
2,480,398 - AO356_10875 0.57 -0.3
2,480,398 - AO356_10875 0.57 -0.1
2,480,398 - AO356_10875 0.57 -1.3
2,480,398 - AO356_10875 0.57 +0.7
2,480,398 - AO356_10875 0.57 +0.8
2,480,398 - AO356_10875 0.57 -0.9
2,480,398 - AO356_10875 0.57 +0.6
2,480,398 - AO356_10875 0.57 -0.7
2,480,493 - AO356_10875 0.64 -1.8
2,480,493 - AO356_10875 0.64 -0.7
2,480,493 - AO356_10875 0.64 +0.0
2,480,493 - AO356_10875 0.64 +0.9
2,480,493 - AO356_10875 0.64 +0.2
2,480,493 - AO356_10875 0.64 +1.7
2,480,493 - AO356_10875 0.64 -0.3
2,480,523 + AO356_10875 0.66 +0.7
2,480,523 + AO356_10875 0.66 +0.1
2,480,523 + AO356_10875 0.66 +0.5
2,480,523 + AO356_10875 0.66 -2.8
2,480,524 - AO356_10875 0.66 +0.1
2,480,524 - AO356_10875 0.66 -0.5
2,480,524 - AO356_10875 0.66 -0.8
2,480,524 - AO356_10875 0.66 -2.8
2,480,524 - AO356_10875 0.66 +0.2
2,480,524 - AO356_10875 0.66 +1.0
2,480,524 - AO356_10875 0.66 +0.6
2,480,600 + AO356_10875 0.71 +1.4
2,480,600 + AO356_10875 0.71 -1.1
2,480,600 + AO356_10875 0.71 +0.6
2,480,601 - AO356_10875 0.71 -0.7
2,480,601 - AO356_10875 0.71 +1.2
2,480,601 - AO356_10875 0.71 -2.2
2,480,601 - AO356_10875 0.71 -0.5
2,480,601 - AO356_10875 0.71 -0.9
2,480,601 - AO356_10875 0.71 -0.4
2,480,628 + AO356_10875 0.73 -1.5
2,480,628 + AO356_10875 0.73 -0.7
2,480,628 + AO356_10875 0.73 +0.4
2,480,628 + AO356_10875 0.73 +0.5
2,480,629 - AO356_10875 0.73 -0.3
2,480,629 - AO356_10875 0.73 -0.7
2,480,629 - AO356_10875 0.73 +0.9
2,480,629 - AO356_10875 0.73 +0.1
2,480,907 + -0.2
2,480,907 + +0.8
2,480,907 + +1.1
2,480,907 + +0.8
2,480,907 + -0.4
2,480,907 + +0.7
2,480,908 - -1.3
2,480,908 - -1.0
2,480,928 + -1.6
2,480,928 + -2.2
2,480,928 + +1.4
2,480,929 - -0.3
2,480,960 + -1.9
2,480,960 + -1.2
2,480,960 + -1.0
2,480,960 + +0.3
2,480,961 - -1.4
2,480,961 - +0.6
2,480,969 + -0.8
2,481,036 + +0.4
2,481,062 + +0.7
2,481,062 + +0.5
2,481,063 - -1.0
2,481,063 - -0.1
2,481,197 - -1.5
2,481,221 - +0.5
2,481,257 - +0.5
2,481,269 + +0.5
2,481,273 + +0.6
2,481,320 + -0.9
2,481,320 + -1.3
2,481,321 - -2.3
2,481,321 - -0.6
2,481,321 - -0.4
2,481,325 - -0.1
2,481,363 + -1.9
2,481,363 + -0.2
2,481,363 + +0.3
2,481,363 + -0.7
2,481,363 + -1.7
2,481,363 + -2.4
2,481,363 + -0.5
2,481,363 + -2.3
2,481,363 + -0.4
2,481,363 + -0.2
2,481,363 + -1.5
2,481,363 + -0.8
2,481,363 + -0.6
2,481,364 - -0.3
2,481,364 - -0.5
2,481,364 - -0.7
2,481,364 - +0.1
2,481,364 - +0.3
2,481,538 + AO356_10880 0.85 -0.8
2,481,701 + AO356_10885 0.49 -1.1
2,481,702 - AO356_10885 0.49 +0.7
2,481,702 - AO356_10885 0.49 -0.3
2,481,702 - AO356_10885 0.49 +1.4
2,481,709 + AO356_10885 0.52 +1.2
2,481,709 + AO356_10885 0.52 -0.4
2,481,719 - AO356_10885 0.56 +1.2
2,481,719 - AO356_10885 0.56 -0.9
2,481,719 - AO356_10885 0.56 -0.3
2,481,719 - AO356_10885 0.56 +1.1
2,481,720 + AO356_10885 0.56 +0.0
2,481,720 + AO356_10885 0.56 +1.2
2,481,720 + AO356_10885 0.56 -0.1
2,481,721 - AO356_10885 0.56 -1.1
2,481,733 + AO356_10885 0.61 -0.6
2,481,734 - AO356_10885 0.61 +0.0
2,481,738 + AO356_10885 0.63 +1.1
2,481,739 - AO356_10885 0.63 +1.6
2,481,739 - AO356_10885 0.63 +0.6
2,481,739 - AO356_10885 0.63 +1.0
2,481,799 + AO356_10885 0.86 +0.5
2,481,799 + AO356_10885 0.86 +0.9
2,481,799 + AO356_10885 0.86 +0.8
2,481,799 + AO356_10885 0.86 +2.0
2,481,799 + AO356_10885 0.86 -0.6
2,481,799 + AO356_10885 0.86 +0.3
2,481,799 + AO356_10885 0.86 +0.6
2,481,800 - AO356_10885 0.86 -0.6
2,481,800 - AO356_10885 0.86 -2.4
2,481,800 - AO356_10885 0.86 -1.6
2,481,800 - AO356_10885 0.86 +0.5
2,481,800 - AO356_10885 0.86 -0.6
2,481,800 - AO356_10885 0.86 +0.9
2,481,800 - AO356_10885 0.86 -1.1
2,481,800 - AO356_10885 0.86 +0.7
2,481,803 - AO356_10885 0.88 -1.3
2,481,803 - AO356_10885 0.88 -0.2
2,481,853 + -0.6
2,481,853 + -1.2
2,482,139 + AO356_10890 0.77 +1.4
2,482,139 + AO356_10890 0.77 +0.0
2,482,139 + AO356_10890 0.77 +2.5
2,482,139 + AO356_10890 0.77 -0.2
2,482,140 - AO356_10890 0.78 -2.4
2,482,140 - AO356_10890 0.78 +0.5
2,482,326 + +1.9
2,482,326 + +0.3
2,482,327 - +0.9
2,482,327 - +0.8
2,482,463 + AO356_10895 0.47 +0.1
2,482,463 + AO356_10895 0.47 +0.2
2,482,463 + AO356_10895 0.47 -0.6
2,482,463 + AO356_10895 0.47 +1.4
2,482,463 + AO356_10895 0.47 +0.2
2,482,464 - AO356_10895 0.48 -2.4
2,482,554 + AO356_10895 0.77 -0.5
2,482,554 + AO356_10895 0.77 +0.4
2,482,555 - AO356_10895 0.77 +0.9
2,482,555 - AO356_10895 0.77 +0.8

Or see this region's nucleotide sequence