Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07735 and AO356_07740 are separated by 299 nucleotides AO356_07740 and AO356_07745 are separated by 54 nucleotides AO356_07745 and AO356_07750 overlap by 4 nucleotides AO356_07750 and AO356_07755 are separated by 230 nucleotides
AO356_07735: AO356_07735 - hydroperoxidase, at 1,718,101 to 1,720,365
_07735
AO356_07740: AO356_07740 - chemotaxis protein, at 1,720,665 to 1,722,584
_07740
AO356_07745: AO356_07745 - plasmid stabilization protein, at 1,722,639 to 1,723,058
_07745
AO356_07750: AO356_07750 - plasmid stabilization protein, at 1,723,055 to 1,723,300
_07750
AO356_07755: AO356_07755 - toxin, at 1,723,531 to 1,726,080
_07755
Position (kb)
1720
1721
1722
1723 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1719.726 kb on + strand, within AO356_07735 at 1719.928 kb on + strand, within AO356_07735 at 1719.929 kb on - strand, within AO356_07735 at 1720.078 kb on - strand, within AO356_07735 at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.274 kb on - strand at 1720.472 kb on + strand at 1720.472 kb on + strand at 1720.473 kb on - strand at 1720.603 kb on + strand at 1720.603 kb on + strand at 1720.603 kb on + strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.604 kb on - strand at 1720.625 kb on + strand at 1720.625 kb on + strand at 1720.625 kb on + strand at 1720.626 kb on - strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.670 kb on + strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.671 kb on - strand at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.860 kb on + strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1720.861 kb on - strand, within AO356_07740 at 1721.010 kb on + strand, within AO356_07740 at 1721.011 kb on - strand, within AO356_07740 at 1721.044 kb on - strand, within AO356_07740 at 1721.097 kb on + strand, within AO356_07740 at 1721.097 kb on + strand, within AO356_07740 at 1721.226 kb on + strand, within AO356_07740 at 1721.228 kb on + strand, within AO356_07740 at 1721.229 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1721.479 kb on - strand, within AO356_07740 at 1722.623 kb on - strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.692 kb on + strand, within AO356_07745 at 1722.708 kb on + strand, within AO356_07745 at 1722.731 kb on + strand, within AO356_07745 at 1722.732 kb on - strand, within AO356_07745 at 1722.802 kb on + strand, within AO356_07745 at 1723.053 kb on + strand at 1723.053 kb on + strand at 1723.054 kb on - strand at 1723.054 kb on - strand at 1723.065 kb on - strand at 1723.193 kb on + strand, within AO356_07750 at 1723.262 kb on + strand, within AO356_07750 at 1723.263 kb on - strand, within AO356_07750 at 1723.285 kb on + strand at 1723.286 kb on - strand at 1723.300 kb on + strand at 1723.301 kb on - strand at 1723.338 kb on + strand at 1723.339 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.432 kb on + strand at 1723.454 kb on + strand at 1723.479 kb on + strand at 1723.480 kb on - strand at 1723.480 kb on - strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 1,719,726 + AO356_07735 0.72 +2.0 1,719,928 + AO356_07735 0.81 +1.2 1,719,929 - AO356_07735 0.81 +0.8 1,720,078 - AO356_07735 0.87 +1.0 1,720,274 - -1.0 1,720,274 - +0.4 1,720,274 - -0.0 1,720,274 - -2.1 1,720,274 - -0.0 1,720,472 + +0.0 1,720,472 + -0.7 1,720,473 - -0.2 1,720,603 + -1.1 1,720,603 + -2.1 1,720,603 + +1.7 1,720,604 - -0.7 1,720,604 - +1.5 1,720,604 - +1.0 1,720,604 - -0.1 1,720,604 - -1.0 1,720,625 + +0.0 1,720,625 + -1.1 1,720,625 + -0.4 1,720,626 - +0.2 1,720,670 + -1.9 1,720,670 + +0.2 1,720,670 + +1.9 1,720,670 + +1.1 1,720,671 - +0.2 1,720,671 - -0.1 1,720,671 - -1.7 1,720,671 - +1.2 1,720,671 - -2.5 1,720,671 - -0.7 1,720,671 - +0.3 1,720,860 + AO356_07740 0.10 -0.3 1,720,860 + AO356_07740 0.10 +0.6 1,720,860 + AO356_07740 0.10 +0.2 1,720,860 + AO356_07740 0.10 +0.7 1,720,860 + AO356_07740 0.10 -0.2 1,720,860 + AO356_07740 0.10 -0.4 1,720,860 + AO356_07740 0.10 -2.5 1,720,860 + AO356_07740 0.10 +0.5 1,720,860 + AO356_07740 0.10 +0.4 1,720,861 - AO356_07740 0.10 -0.0 1,720,861 - AO356_07740 0.10 -0.4 1,720,861 - AO356_07740 0.10 +0.2 1,721,010 + AO356_07740 0.18 +0.7 1,721,011 - AO356_07740 0.18 +0.4 1,721,044 - AO356_07740 0.20 +0.8 1,721,097 + AO356_07740 0.23 -0.3 1,721,097 + AO356_07740 0.23 -0.5 1,721,226 + AO356_07740 0.29 +0.4 1,721,228 + AO356_07740 0.29 +0.2 1,721,229 - AO356_07740 0.29 +0.2 1,721,479 - AO356_07740 0.42 -0.1 1,721,479 - AO356_07740 0.42 -2.4 1,721,479 - AO356_07740 0.42 +1.4 1,722,623 - -1.0 1,722,626 + -0.8 1,722,626 + -0.2 1,722,626 + -0.9 1,722,626 + +1.9 1,722,626 + +0.7 1,722,626 + +1.5 1,722,626 + -1.7 1,722,627 - -1.1 1,722,627 - +0.2 1,722,627 - +0.5 1,722,627 - +1.0 1,722,627 - -0.7 1,722,627 - -0.2 1,722,627 - +0.3 1,722,627 - -1.1 1,722,627 - +0.2 1,722,627 - +0.1 1,722,692 + AO356_07745 0.13 -0.1 1,722,708 + AO356_07745 0.16 -1.4 1,722,731 + AO356_07745 0.22 +0.4 1,722,732 - AO356_07745 0.22 -0.9 1,722,802 + AO356_07745 0.39 -0.4 1,723,053 + +1.3 1,723,053 + -0.2 1,723,054 - -0.2 1,723,054 - +1.0 1,723,065 - -0.8 1,723,193 + AO356_07750 0.56 +1.1 1,723,262 + AO356_07750 0.84 +1.1 1,723,263 - AO356_07750 0.85 +1.5 1,723,285 + +1.7 1,723,286 - -0.8 1,723,300 + +0.9 1,723,301 - -0.1 1,723,338 + +0.2 1,723,339 - -0.7 1,723,344 - -0.8 1,723,344 - +0.1 1,723,344 - -1.0 1,723,432 + +1.4 1,723,454 + +1.4 1,723,479 + +0.4 1,723,480 - +1.2 1,723,480 - -2.2 1,723,521 + +0.3 1,723,521 + -0.3 1,723,521 + +0.5 1,723,522 - +0.9
Or see this region's nucleotide sequence