Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07110

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07105 and AO356_07110 are separated by 60 nucleotidesAO356_07110 and AO356_07115 are separated by 56 nucleotidesAO356_07115 and AO356_07120 are separated by 198 nucleotides AO356_07105: AO356_07105 - hypothetical protein, at 1,564,551 to 1,568,354 _07105 AO356_07110: AO356_07110 - ribonuclease G, at 1,568,415 to 1,569,872 _07110 AO356_07115: AO356_07115 - septum formation protein Maf, at 1,569,929 to 1,570,525 _07115 AO356_07120: AO356_07120 - rod shape-determining protein MreD, at 1,570,724 to 1,571,212 _07120 Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1567.460 kb on - strand, within AO356_07105at 1567.675 kb on + strand, within AO356_07105at 1567.675 kb on + strand, within AO356_07105at 1567.675 kb on + strand, within AO356_07105at 1567.675 kb on + strand, within AO356_07105at 1567.676 kb on - strand, within AO356_07105at 1567.816 kb on + strand, within AO356_07105at 1567.816 kb on + strand, within AO356_07105at 1567.817 kb on - strand, within AO356_07105at 1567.817 kb on - strand, within AO356_07105at 1568.270 kb on - strandat 1568.379 kb on + strandat 1568.379 kb on + strandat 1568.380 kb on - strandat 1568.434 kb on + strandat 1568.435 kb on - strandat 1568.435 kb on - strandat 1568.435 kb on - strandat 1568.435 kb on - strandat 1568.449 kb on + strandat 1568.449 kb on + strandat 1568.450 kb on - strandat 1568.450 kb on - strandat 1568.450 kb on - strandat 1568.564 kb on + strand, within AO356_07110at 1568.564 kb on + strand, within AO356_07110at 1568.565 kb on - strand, within AO356_07110at 1568.565 kb on - strand, within AO356_07110at 1568.565 kb on - strand, within AO356_07110at 1568.565 kb on - strand, within AO356_07110at 1568.566 kb on + strand, within AO356_07110at 1568.620 kb on + strand, within AO356_07110at 1569.076 kb on + strand, within AO356_07110at 1569.076 kb on + strand, within AO356_07110at 1569.106 kb on + strand, within AO356_07110at 1569.107 kb on - strand, within AO356_07110at 1569.256 kb on + strand, within AO356_07110at 1569.256 kb on + strand, within AO356_07110at 1569.257 kb on - strand, within AO356_07110at 1569.505 kb on + strand, within AO356_07110at 1569.505 kb on + strand, within AO356_07110at 1569.506 kb on - strand, within AO356_07110at 1569.539 kb on + strand, within AO356_07110at 1569.540 kb on - strand, within AO356_07110at 1569.748 kb on + strandat 1569.748 kb on + strandat 1569.749 kb on - strandat 1569.749 kb on - strandat 1569.752 kb on + strandat 1569.752 kb on + strandat 1569.752 kb on + strandat 1569.960 kb on - strandat 1570.020 kb on + strand, within AO356_07115at 1570.021 kb on - strand, within AO356_07115at 1570.066 kb on + strand, within AO356_07115at 1570.067 kb on - strand, within AO356_07115at 1570.071 kb on + strand, within AO356_07115at 1570.071 kb on + strand, within AO356_07115at 1570.071 kb on + strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.072 kb on - strand, within AO356_07115at 1570.110 kb on + strand, within AO356_07115at 1570.110 kb on + strand, within AO356_07115at 1570.395 kb on + strand, within AO356_07115at 1570.396 kb on - strand, within AO356_07115at 1570.512 kb on + strandat 1570.513 kb on - strandat 1570.622 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.688 kb on + strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.689 kb on - strandat 1570.707 kb on + strandat 1570.707 kb on + strandat 1570.708 kb on - strandat 1570.708 kb on - strandat 1570.711 kb on + strandat 1570.712 kb on - strandat 1570.712 kb on - strandat 1570.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,567,460 - AO356_07105 0.76 -1.2
1,567,675 + AO356_07105 0.82 -1.1
1,567,675 + AO356_07105 0.82 +3.7
1,567,675 + AO356_07105 0.82 -1.1
1,567,675 + AO356_07105 0.82 -0.4
1,567,676 - AO356_07105 0.82 +2.9
1,567,816 + AO356_07105 0.86 -0.4
1,567,816 + AO356_07105 0.86 +0.9
1,567,817 - AO356_07105 0.86 -0.1
1,567,817 - AO356_07105 0.86 -0.7
1,568,270 - +0.6
1,568,379 + +0.2
1,568,379 + -1.4
1,568,380 - -0.9
1,568,434 + +2.8
1,568,435 - +2.7
1,568,435 - +1.6
1,568,435 - +2.2
1,568,435 - +2.1
1,568,449 + +1.7
1,568,449 + +0.6
1,568,450 - +1.3
1,568,450 - +1.1
1,568,450 - +0.7
1,568,564 + AO356_07110 0.10 -0.4
1,568,564 + AO356_07110 0.10 +1.6
1,568,565 - AO356_07110 0.10 +0.8
1,568,565 - AO356_07110 0.10 +2.8
1,568,565 - AO356_07110 0.10 -0.7
1,568,565 - AO356_07110 0.10 +1.7
1,568,566 + AO356_07110 0.10 +1.2
1,568,620 + AO356_07110 0.14 -0.4
1,569,076 + AO356_07110 0.45 +1.9
1,569,076 + AO356_07110 0.45 +2.7
1,569,106 + AO356_07110 0.47 +2.9
1,569,107 - AO356_07110 0.47 +1.9
1,569,256 + AO356_07110 0.58 +2.7
1,569,256 + AO356_07110 0.58 -1.1
1,569,257 - AO356_07110 0.58 -0.1
1,569,505 + AO356_07110 0.75 +4.0
1,569,505 + AO356_07110 0.75 +0.9
1,569,506 - AO356_07110 0.75 +1.8
1,569,539 + AO356_07110 0.77 +1.8
1,569,540 - AO356_07110 0.77 +1.7
1,569,748 + +1.9
1,569,748 + +0.5
1,569,749 - +2.1
1,569,749 - +1.1
1,569,752 + +1.5
1,569,752 + -0.9
1,569,752 + +1.3
1,569,960 - -0.1
1,570,020 + AO356_07115 0.15 +0.0
1,570,021 - AO356_07115 0.15 -0.1
1,570,066 + AO356_07115 0.23 +0.2
1,570,067 - AO356_07115 0.23 -0.8
1,570,071 + AO356_07115 0.24 +0.6
1,570,071 + AO356_07115 0.24 -0.0
1,570,071 + AO356_07115 0.24 +0.3
1,570,072 - AO356_07115 0.24 -0.5
1,570,072 - AO356_07115 0.24 +0.3
1,570,072 - AO356_07115 0.24 +1.7
1,570,072 - AO356_07115 0.24 -0.4
1,570,072 - AO356_07115 0.24 -2.7
1,570,072 - AO356_07115 0.24 +0.8
1,570,072 - AO356_07115 0.24 -0.0
1,570,072 - AO356_07115 0.24 -0.7
1,570,072 - AO356_07115 0.24 -1.3
1,570,072 - AO356_07115 0.24 -1.6
1,570,110 + AO356_07115 0.30 +0.9
1,570,110 + AO356_07115 0.30 +0.7
1,570,395 + AO356_07115 0.78 +1.9
1,570,396 - AO356_07115 0.78 -0.0
1,570,512 + +1.6
1,570,513 - +0.4
1,570,622 + -0.1
1,570,688 + -0.5
1,570,688 + +1.2
1,570,688 + +1.9
1,570,688 + +1.8
1,570,688 + +2.9
1,570,688 + +1.1
1,570,688 + +0.8
1,570,688 + +1.4
1,570,688 + +1.6
1,570,688 + -1.0
1,570,689 - -0.0
1,570,689 - -1.4
1,570,689 - +0.6
1,570,689 - -2.1
1,570,689 - -0.4
1,570,689 - +0.8
1,570,689 - -2.1
1,570,689 - -2.4
1,570,689 - +0.3
1,570,707 + +0.3
1,570,707 + +1.9
1,570,708 - -0.4
1,570,708 - -1.3
1,570,711 + +1.0
1,570,712 - -1.2
1,570,712 - -0.2
1,570,712 - -0.7

Or see this region's nucleotide sequence