Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07010 and AO356_07015 are separated by 0 nucleotides AO356_07015 and AO356_07020 are separated by 7 nucleotides AO356_07020 and AO356_07025 overlap by 14 nucleotides AO356_07025 and AO356_07030 overlap by 1 nucleotides
AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686
_07010
AO356_07015: AO356_07015 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,549,687 to 1,550,211
_07015
AO356_07020: AO356_07020 - LPS export ABC transporter periplasmic protein LptC, at 1,550,219 to 1,550,788
_07020
AO356_07025: AO356_07025 - lipopolysaccharide transport periplasmic protein LptA, at 1,550,775 to 1,551,320
_07025
AO356_07030: AO356_07030 - ABC transporter ATP-binding protein, at 1,551,320 to 1,552,045
_07030
Position (kb) 1550
1551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.654 kb on + strand, within AO356_07020 at 1550.700 kb on + strand, within AO356_07020 at 1550.763 kb on + strand at 1550.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 1,549,684 + -0.0 1,549,684 + +0.4 1,549,684 + -3.0 1,549,684 + +0.3 1,549,684 + -0.8 1,550,218 + +0.8 1,550,218 + -1.2 1,550,218 + -2.6 1,550,654 + AO356_07020 0.76 -1.0 1,550,700 + AO356_07020 0.84 -1.5 1,550,763 + -0.9 1,550,763 + -1.1
Or see this region's nucleotide sequence