Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06685

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06680 and AO356_06685 are separated by 63 nucleotidesAO356_06685 and AO356_06690 are separated by 43 nucleotides AO356_06680: AO356_06680 - preprotein translocase subunit SecD, at 1,474,897 to 1,476,765 _06680 AO356_06685: AO356_06685 - preprotein translocase subunit YajC, at 1,476,829 to 1,477,167 _06685 AO356_06690: AO356_06690 - queuine tRNA-ribosyltransferase, at 1,477,211 to 1,478,344 _06690 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1476.780 kb on - strandat 1476.817 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.831 kb on - strandat 1476.917 kb on - strand, within AO356_06685at 1477.056 kb on - strand, within AO356_06685at 1477.150 kb on - strandat 1477.150 kb on - strandat 1477.156 kb on - strandat 1477.170 kb on - strandat 1477.188 kb on - strandat 1477.188 kb on - strandat 1477.188 kb on - strandat 1477.197 kb on - strandat 1477.197 kb on - strandat 1477.249 kb on - strandat 1477.249 kb on - strandat 1477.277 kb on - strandat 1477.310 kb on - strandat 1477.310 kb on - strandat 1477.393 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.420 kb on - strand, within AO356_06690at 1477.604 kb on - strand, within AO356_06690at 1478.156 kb on - strand, within AO356_06690

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,476,780 - -1.1
1,476,817 - +0.8
1,476,831 - +1.0
1,476,831 - +0.5
1,476,831 - +1.2
1,476,831 - -3.1
1,476,831 - -0.3
1,476,831 - +0.5
1,476,831 - +0.3
1,476,917 - AO356_06685 0.26 -0.7
1,477,056 - AO356_06685 0.67 +1.5
1,477,150 - +0.9
1,477,150 - +0.5
1,477,156 - +2.7
1,477,170 - +1.1
1,477,188 - -0.3
1,477,188 - -0.8
1,477,188 - -1.6
1,477,197 - +0.7
1,477,197 - -0.7
1,477,249 - +2.3
1,477,249 - +0.3
1,477,277 - +0.8
1,477,310 - +0.4
1,477,310 - +1.6
1,477,393 - AO356_06690 0.16 +2.0
1,477,420 - AO356_06690 0.18 +1.9
1,477,420 - AO356_06690 0.18 +1.6
1,477,420 - AO356_06690 0.18 +1.9
1,477,604 - AO356_06690 0.35 +1.6
1,478,156 - AO356_06690 0.83 +0.3

Or see this region's nucleotide sequence