Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06565

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06555 and AO356_06560 are separated by 63 nucleotidesAO356_06560 and AO356_06565 overlap by 13 nucleotidesAO356_06565 and AO356_06570 are separated by 236 nucleotides AO356_06555: AO356_06555 - hypothetical protein, at 1,452,585 to 1,452,998 _06555 AO356_06560: AO356_06560 - carbon-nitrogen hydrolase, at 1,453,062 to 1,453,856 _06560 AO356_06565: AO356_06565 - aminotransferase, at 1,453,844 to 1,454,992 _06565 AO356_06570: AO356_06570 - ribosome-associated GTPase EngA, at 1,455,229 to 1,456,701 _06570 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1452.972 kb on + strandat 1452.973 kb on - strandat 1452.999 kb on - strandat 1453.225 kb on + strand, within AO356_06560at 1453.226 kb on - strand, within AO356_06560at 1453.226 kb on - strand, within AO356_06560at 1453.273 kb on + strand, within AO356_06560at 1453.273 kb on + strand, within AO356_06560at 1453.273 kb on + strand, within AO356_06560at 1453.273 kb on + strand, within AO356_06560at 1453.274 kb on - strand, within AO356_06560at 1453.274 kb on - strand, within AO356_06560at 1453.274 kb on - strand, within AO356_06560at 1453.274 kb on - strand, within AO356_06560at 1453.322 kb on + strand, within AO356_06560at 1453.323 kb on - strand, within AO356_06560at 1453.352 kb on - strand, within AO356_06560at 1453.409 kb on - strand, within AO356_06560at 1453.474 kb on + strand, within AO356_06560at 1453.474 kb on + strand, within AO356_06560at 1453.475 kb on - strand, within AO356_06560at 1453.475 kb on - strand, within AO356_06560at 1453.475 kb on - strand, within AO356_06560at 1453.475 kb on - strand, within AO356_06560at 1453.475 kb on - strand, within AO356_06560at 1453.519 kb on + strand, within AO356_06560at 1453.519 kb on + strand, within AO356_06560at 1453.520 kb on - strand, within AO356_06560at 1453.520 kb on - strand, within AO356_06560at 1453.520 kb on - strand, within AO356_06560at 1453.520 kb on - strand, within AO356_06560at 1453.856 kb on + strandat 1453.856 kb on + strandat 1453.941 kb on + strandat 1453.941 kb on + strandat 1453.941 kb on + strandat 1453.942 kb on - strandat 1453.942 kb on - strandat 1453.942 kb on - strandat 1454.035 kb on - strand, within AO356_06565at 1454.035 kb on - strand, within AO356_06565at 1454.052 kb on + strand, within AO356_06565at 1454.052 kb on + strand, within AO356_06565at 1454.052 kb on + strand, within AO356_06565at 1454.053 kb on - strand, within AO356_06565at 1454.127 kb on + strand, within AO356_06565at 1454.127 kb on + strand, within AO356_06565at 1454.127 kb on + strand, within AO356_06565at 1454.128 kb on - strand, within AO356_06565at 1454.172 kb on + strand, within AO356_06565at 1454.172 kb on + strand, within AO356_06565at 1454.172 kb on + strand, within AO356_06565at 1454.172 kb on + strand, within AO356_06565at 1454.172 kb on + strand, within AO356_06565at 1454.173 kb on - strand, within AO356_06565at 1454.173 kb on - strand, within AO356_06565at 1454.173 kb on - strand, within AO356_06565at 1454.173 kb on - strand, within AO356_06565at 1454.220 kb on + strand, within AO356_06565at 1454.220 kb on + strand, within AO356_06565at 1454.220 kb on + strand, within AO356_06565at 1454.220 kb on + strand, within AO356_06565at 1454.221 kb on - strand, within AO356_06565at 1454.221 kb on - strand, within AO356_06565at 1454.221 kb on - strand, within AO356_06565at 1454.298 kb on + strand, within AO356_06565at 1454.298 kb on + strand, within AO356_06565at 1454.299 kb on - strand, within AO356_06565at 1454.397 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.418 kb on + strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.419 kb on - strand, within AO356_06565at 1454.591 kb on + strand, within AO356_06565at 1454.591 kb on + strand, within AO356_06565at 1454.591 kb on + strand, within AO356_06565at 1454.591 kb on + strand, within AO356_06565at 1454.591 kb on + strand, within AO356_06565at 1454.592 kb on - strand, within AO356_06565at 1454.592 kb on - strand, within AO356_06565at 1454.592 kb on - strand, within AO356_06565at 1454.592 kb on - strand, within AO356_06565at 1454.612 kb on + strand, within AO356_06565at 1454.612 kb on + strand, within AO356_06565at 1454.612 kb on + strand, within AO356_06565at 1454.612 kb on + strand, within AO356_06565at 1454.613 kb on - strand, within AO356_06565at 1454.628 kb on + strand, within AO356_06565at 1454.628 kb on + strand, within AO356_06565at 1454.628 kb on + strand, within AO356_06565at 1454.628 kb on + strand, within AO356_06565at 1454.629 kb on - strand, within AO356_06565at 1454.629 kb on - strand, within AO356_06565at 1454.629 kb on - strand, within AO356_06565at 1454.629 kb on - strand, within AO356_06565at 1454.629 kb on - strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.637 kb on + strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.638 kb on - strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.641 kb on + strand, within AO356_06565at 1454.642 kb on - strand, within AO356_06565at 1454.642 kb on - strand, within AO356_06565at 1454.642 kb on - strand, within AO356_06565at 1454.845 kb on + strand, within AO356_06565at 1454.846 kb on - strand, within AO356_06565at 1454.846 kb on - strand, within AO356_06565at 1455.024 kb on + strandat 1455.114 kb on - strandat 1455.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,452,972 + +0.6
1,452,973 - -0.3
1,452,999 - -0.3
1,453,225 + AO356_06560 0.21 +0.6
1,453,226 - AO356_06560 0.21 +2.0
1,453,226 - AO356_06560 0.21 -1.0
1,453,273 + AO356_06560 0.27 -2.6
1,453,273 + AO356_06560 0.27 +0.2
1,453,273 + AO356_06560 0.27 -0.0
1,453,273 + AO356_06560 0.27 -0.3
1,453,274 - AO356_06560 0.27 +1.8
1,453,274 - AO356_06560 0.27 -0.3
1,453,274 - AO356_06560 0.27 +0.5
1,453,274 - AO356_06560 0.27 +0.7
1,453,322 + AO356_06560 0.33 -1.3
1,453,323 - AO356_06560 0.33 -1.1
1,453,352 - AO356_06560 0.36 -1.3
1,453,409 - AO356_06560 0.44 +0.3
1,453,474 + AO356_06560 0.52 -1.8
1,453,474 + AO356_06560 0.52 +0.3
1,453,475 - AO356_06560 0.52 -1.5
1,453,475 - AO356_06560 0.52 +0.3
1,453,475 - AO356_06560 0.52 +1.8
1,453,475 - AO356_06560 0.52 +0.9
1,453,475 - AO356_06560 0.52 -0.3
1,453,519 + AO356_06560 0.57 -0.3
1,453,519 + AO356_06560 0.57 -1.5
1,453,520 - AO356_06560 0.58 +0.0
1,453,520 - AO356_06560 0.58 -1.3
1,453,520 - AO356_06560 0.58 +1.2
1,453,520 - AO356_06560 0.58 -0.4
1,453,856 + -0.0
1,453,856 + +0.5
1,453,941 + +1.4
1,453,941 + +1.4
1,453,941 + +0.8
1,453,942 - +1.0
1,453,942 - -1.4
1,453,942 - +0.2
1,454,035 - AO356_06565 0.17 +1.5
1,454,035 - AO356_06565 0.17 -0.1
1,454,052 + AO356_06565 0.18 +1.0
1,454,052 + AO356_06565 0.18 +0.3
1,454,052 + AO356_06565 0.18 +0.0
1,454,053 - AO356_06565 0.18 -1.0
1,454,127 + AO356_06565 0.25 +0.1
1,454,127 + AO356_06565 0.25 -0.9
1,454,127 + AO356_06565 0.25 +0.4
1,454,128 - AO356_06565 0.25 +1.4
1,454,172 + AO356_06565 0.29 -0.1
1,454,172 + AO356_06565 0.29 +0.1
1,454,172 + AO356_06565 0.29 +0.2
1,454,172 + AO356_06565 0.29 -0.3
1,454,172 + AO356_06565 0.29 +0.5
1,454,173 - AO356_06565 0.29 +0.5
1,454,173 - AO356_06565 0.29 +1.1
1,454,173 - AO356_06565 0.29 +0.3
1,454,173 - AO356_06565 0.29 +0.4
1,454,220 + AO356_06565 0.33 +0.1
1,454,220 + AO356_06565 0.33 +0.3
1,454,220 + AO356_06565 0.33 -0.1
1,454,220 + AO356_06565 0.33 +1.2
1,454,221 - AO356_06565 0.33 -0.3
1,454,221 - AO356_06565 0.33 +0.0
1,454,221 - AO356_06565 0.33 -0.5
1,454,298 + AO356_06565 0.40 +0.9
1,454,298 + AO356_06565 0.40 -1.6
1,454,299 - AO356_06565 0.40 +0.9
1,454,397 + AO356_06565 0.48 -0.8
1,454,418 + AO356_06565 0.50 +0.3
1,454,418 + AO356_06565 0.50 -0.6
1,454,418 + AO356_06565 0.50 -1.0
1,454,418 + AO356_06565 0.50 +0.6
1,454,418 + AO356_06565 0.50 -2.4
1,454,418 + AO356_06565 0.50 -0.0
1,454,419 - AO356_06565 0.50 -0.7
1,454,419 - AO356_06565 0.50 +0.5
1,454,419 - AO356_06565 0.50 -1.3
1,454,419 - AO356_06565 0.50 -0.9
1,454,419 - AO356_06565 0.50 +0.1
1,454,419 - AO356_06565 0.50 +0.7
1,454,419 - AO356_06565 0.50 +0.3
1,454,591 + AO356_06565 0.65 -1.1
1,454,591 + AO356_06565 0.65 +1.5
1,454,591 + AO356_06565 0.65 +0.2
1,454,591 + AO356_06565 0.65 -0.2
1,454,591 + AO356_06565 0.65 -0.1
1,454,592 - AO356_06565 0.65 +0.1
1,454,592 - AO356_06565 0.65 -0.2
1,454,592 - AO356_06565 0.65 +0.0
1,454,592 - AO356_06565 0.65 -1.3
1,454,612 + AO356_06565 0.67 +0.3
1,454,612 + AO356_06565 0.67 +1.1
1,454,612 + AO356_06565 0.67 +0.6
1,454,612 + AO356_06565 0.67 +0.4
1,454,613 - AO356_06565 0.67 -0.0
1,454,628 + AO356_06565 0.68 +0.6
1,454,628 + AO356_06565 0.68 -0.0
1,454,628 + AO356_06565 0.68 -1.1
1,454,628 + AO356_06565 0.68 +0.0
1,454,629 - AO356_06565 0.68 +0.3
1,454,629 - AO356_06565 0.68 -0.1
1,454,629 - AO356_06565 0.68 +0.2
1,454,629 - AO356_06565 0.68 +1.1
1,454,629 - AO356_06565 0.68 -0.7
1,454,637 + AO356_06565 0.69 +0.5
1,454,637 + AO356_06565 0.69 +0.8
1,454,637 + AO356_06565 0.69 -0.1
1,454,637 + AO356_06565 0.69 -0.3
1,454,637 + AO356_06565 0.69 +2.0
1,454,637 + AO356_06565 0.69 +0.3
1,454,637 + AO356_06565 0.69 +1.9
1,454,638 - AO356_06565 0.69 +0.7
1,454,638 - AO356_06565 0.69 +0.7
1,454,638 - AO356_06565 0.69 +0.5
1,454,638 - AO356_06565 0.69 +0.0
1,454,638 - AO356_06565 0.69 +1.0
1,454,638 - AO356_06565 0.69 +1.2
1,454,641 + AO356_06565 0.69 -0.5
1,454,641 + AO356_06565 0.69 -2.1
1,454,641 + AO356_06565 0.69 +0.6
1,454,641 + AO356_06565 0.69 +2.0
1,454,641 + AO356_06565 0.69 -0.8
1,454,641 + AO356_06565 0.69 +1.2
1,454,642 - AO356_06565 0.69 +1.2
1,454,642 - AO356_06565 0.69 -1.5
1,454,642 - AO356_06565 0.69 +0.7
1,454,845 + AO356_06565 0.87 +0.6
1,454,846 - AO356_06565 0.87 +0.6
1,454,846 - AO356_06565 0.87 -0.5
1,455,024 + +2.9
1,455,114 - +1.0
1,455,114 - +1.3

Or see this region's nucleotide sequence