Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06225 and AO356_06230 are separated by 151 nucleotides AO356_06230 and AO356_06235 are separated by 101 nucleotides AO356_06235 and AO356_06240 are separated by 108 nucleotides
AO356_06225: AO356_06225 - hypothetical protein, at 1,378,860 to 1,379,414
_06225
AO356_06230: AO356_06230 - TetR family transcriptional regulator, at 1,379,566 to 1,380,282
_06230
AO356_06235: AO356_06235 - lysine--tRNA ligase, at 1,380,384 to 1,381,886
_06235
AO356_06240: AO356_06240 - peptide chain release factor 2, at 1,381,995 to 1,382,876
_06240
Position (kb)
1380
1381
1382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1379.392 kb on - strand at 1379.567 kb on + strand at 1379.594 kb on + strand at 1379.594 kb on + strand at 1379.594 kb on + strand at 1379.595 kb on - strand at 1379.595 kb on - strand at 1379.595 kb on - strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.616 kb on + strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.617 kb on - strand at 1379.660 kb on + strand, within AO356_06230 at 1379.661 kb on - strand, within AO356_06230 at 1379.722 kb on + strand, within AO356_06230 at 1379.722 kb on + strand, within AO356_06230 at 1379.722 kb on + strand, within AO356_06230 at 1379.723 kb on - strand, within AO356_06230 at 1379.725 kb on + strand, within AO356_06230 at 1379.725 kb on + strand, within AO356_06230 at 1379.725 kb on + strand, within AO356_06230 at 1379.725 kb on + strand, within AO356_06230 at 1379.725 kb on + strand, within AO356_06230 at 1379.726 kb on - strand, within AO356_06230 at 1379.841 kb on - strand, within AO356_06230 at 1379.873 kb on + strand, within AO356_06230 at 1379.873 kb on + strand, within AO356_06230 at 1379.873 kb on + strand, within AO356_06230 at 1379.873 kb on + strand, within AO356_06230 at 1379.874 kb on - strand, within AO356_06230 at 1379.874 kb on - strand, within AO356_06230 at 1379.940 kb on - strand, within AO356_06230 at 1379.940 kb on - strand, within AO356_06230 at 1380.003 kb on + strand, within AO356_06230 at 1380.004 kb on - strand, within AO356_06230 at 1380.004 kb on - strand, within AO356_06230 at 1380.015 kb on - strand, within AO356_06230 at 1380.015 kb on - strand, within AO356_06230 at 1380.060 kb on - strand, within AO356_06230 at 1380.060 kb on - strand, within AO356_06230 at 1380.060 kb on - strand, within AO356_06230 at 1380.062 kb on + strand, within AO356_06230 at 1380.063 kb on - strand, within AO356_06230 at 1380.063 kb on - strand, within AO356_06230 at 1380.063 kb on - strand, within AO356_06230 at 1380.312 kb on - strand at 1380.322 kb on + strand at 1380.322 kb on + strand at 1380.323 kb on - strand at 1380.331 kb on - strand at 1380.344 kb on + strand at 1380.372 kb on + strand at 1380.385 kb on + strand at 1380.385 kb on + strand at 1380.385 kb on + strand at 1380.386 kb on - strand at 1380.386 kb on - strand at 1380.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 1,379,392 - +0.6 1,379,567 + +1.2 1,379,594 + -0.2 1,379,594 + +0.2 1,379,594 + -0.2 1,379,595 - -0.6 1,379,595 - +0.7 1,379,595 - +0.2 1,379,616 + -0.1 1,379,616 + -0.1 1,379,616 + -1.2 1,379,616 + +0.5 1,379,616 + +0.4 1,379,616 + +0.1 1,379,616 + +0.4 1,379,616 + -0.4 1,379,616 + +1.0 1,379,616 + +0.2 1,379,616 + -1.4 1,379,616 + +1.7 1,379,617 - -1.8 1,379,617 - -0.3 1,379,617 - -0.3 1,379,617 - +0.1 1,379,617 - -0.5 1,379,617 - +0.2 1,379,617 - -0.2 1,379,660 + AO356_06230 0.13 -3.0 1,379,661 - AO356_06230 0.13 -2.4 1,379,722 + AO356_06230 0.22 +0.6 1,379,722 + AO356_06230 0.22 +1.0 1,379,722 + AO356_06230 0.22 -0.2 1,379,723 - AO356_06230 0.22 -2.4 1,379,725 + AO356_06230 0.22 -2.4 1,379,725 + AO356_06230 0.22 +0.1 1,379,725 + AO356_06230 0.22 +0.0 1,379,725 + AO356_06230 0.22 -0.7 1,379,725 + AO356_06230 0.22 +0.1 1,379,726 - AO356_06230 0.22 -1.3 1,379,841 - AO356_06230 0.38 +0.5 1,379,873 + AO356_06230 0.43 +0.6 1,379,873 + AO356_06230 0.43 -0.8 1,379,873 + AO356_06230 0.43 -0.7 1,379,873 + AO356_06230 0.43 +0.4 1,379,874 - AO356_06230 0.43 +1.7 1,379,874 - AO356_06230 0.43 -0.1 1,379,940 - AO356_06230 0.52 -0.8 1,379,940 - AO356_06230 0.52 -0.1 1,380,003 + AO356_06230 0.61 -0.0 1,380,004 - AO356_06230 0.61 -0.7 1,380,004 - AO356_06230 0.61 -0.4 1,380,015 - AO356_06230 0.63 +0.1 1,380,015 - AO356_06230 0.63 +2.2 1,380,060 - AO356_06230 0.69 +1.4 1,380,060 - AO356_06230 0.69 -1.3 1,380,060 - AO356_06230 0.69 -0.1 1,380,062 + AO356_06230 0.69 -0.1 1,380,063 - AO356_06230 0.69 +1.6 1,380,063 - AO356_06230 0.69 -0.3 1,380,063 - AO356_06230 0.69 +0.7 1,380,312 - -1.3 1,380,322 + +0.2 1,380,322 + +0.2 1,380,323 - -0.4 1,380,331 - +0.5 1,380,344 + +0.8 1,380,372 + -1.5 1,380,385 + +1.3 1,380,385 + +0.3 1,380,385 + +0.4 1,380,386 - +1.2 1,380,386 - -0.7 1,380,386 - -1.3
Or see this region's nucleotide sequence