Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05825 and AO356_05830 are separated by 0 nucleotides AO356_05830 and AO356_05835 overlap by 4 nucleotides AO356_05835 and AO356_05840 overlap by 4 nucleotides AO356_05840 and AO356_05845 are separated by 11 nucleotides AO356_05845 and AO356_05850 are separated by 3 nucleotides
AO356_05825: AO356_05825 - phage tail protein, at 1,291,857 to 1,293,803
_05825
AO356_05830: AO356_05830 - phage tail protein, at 1,293,804 to 1,294,439
_05830
AO356_05835: AO356_05835 - baseplate J protein, at 1,294,436 to 1,295,431
_05835
AO356_05840: AO356_05840 - phage baseplate protein, at 1,295,428 to 1,295,760
_05840
AO356_05845: AO356_05845 - baseplate assembly protein, at 1,295,772 to 1,296,383
_05845
AO356_05850: AO356_05850 - hypothetical protein, at 1,296,387 to 1,296,899
_05850
Position (kb)
1294
1295
1296 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1293.436 kb on + strand, within AO356_05825 at 1293.436 kb on + strand, within AO356_05825 at 1293.436 kb on + strand, within AO356_05825 at 1293.437 kb on - strand, within AO356_05825 at 1293.437 kb on - strand, within AO356_05825 at 1293.491 kb on - strand, within AO356_05825 at 1293.505 kb on + strand, within AO356_05825 at 1293.506 kb on - strand, within AO356_05825 at 1293.506 kb on - strand, within AO356_05825 at 1293.547 kb on + strand, within AO356_05825 at 1293.682 kb on + strand at 1293.682 kb on + strand at 1293.683 kb on - strand at 1293.683 kb on - strand at 1293.683 kb on - strand at 1293.790 kb on + strand at 1293.790 kb on + strand at 1293.790 kb on + strand at 1293.790 kb on + strand at 1293.791 kb on - strand at 1293.791 kb on - strand at 1293.791 kb on - strand at 1293.793 kb on + strand at 1293.794 kb on - strand at 1293.805 kb on + strand at 1293.806 kb on - strand at 1293.820 kb on + strand at 1293.824 kb on + strand at 1293.824 kb on + strand at 1293.824 kb on + strand at 1293.824 kb on + strand at 1293.825 kb on - strand at 1293.825 kb on - strand at 1293.845 kb on - strand at 1293.845 kb on - strand at 1294.051 kb on + strand, within AO356_05830 at 1294.052 kb on - strand, within AO356_05830 at 1294.283 kb on - strand, within AO356_05830 at 1294.439 kb on + strand at 1294.440 kb on - strand at 1294.557 kb on + strand, within AO356_05835 at 1294.557 kb on + strand, within AO356_05835 at 1294.908 kb on + strand, within AO356_05835 at 1294.908 kb on + strand, within AO356_05835 at 1294.908 kb on + strand, within AO356_05835 at 1294.973 kb on - strand, within AO356_05835 at 1295.032 kb on - strand, within AO356_05835 at 1295.032 kb on - strand, within AO356_05835 at 1295.065 kb on - strand, within AO356_05835 at 1295.065 kb on - strand, within AO356_05835 at 1295.109 kb on - strand, within AO356_05835 at 1295.202 kb on + strand, within AO356_05835 at 1295.202 kb on + strand, within AO356_05835 at 1295.202 kb on + strand, within AO356_05835 at 1295.325 kb on + strand, within AO356_05835 at 1295.326 kb on - strand, within AO356_05835 at 1295.558 kb on + strand, within AO356_05840 at 1295.559 kb on - strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.645 kb on + strand, within AO356_05840 at 1295.646 kb on - strand, within AO356_05840 at 1295.646 kb on - strand, within AO356_05840 at 1295.646 kb on - strand, within AO356_05840 at 1295.646 kb on - strand, within AO356_05840 at 1295.646 kb on - strand, within AO356_05840 at 1295.773 kb on + strand at 1295.773 kb on + strand at 1295.774 kb on - strand at 1296.127 kb on - strand, within AO356_05845 at 1296.406 kb on + strand at 1296.406 kb on + strand at 1296.406 kb on + strand at 1296.407 kb on - strand at 1296.407 kb on - strand at 1296.407 kb on - strand at 1296.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 1,293,436 + AO356_05825 0.81 +0.6 1,293,436 + AO356_05825 0.81 +1.0 1,293,436 + AO356_05825 0.81 -2.1 1,293,437 - AO356_05825 0.81 +1.6 1,293,437 - AO356_05825 0.81 +0.1 1,293,491 - AO356_05825 0.84 +0.1 1,293,505 + AO356_05825 0.85 +1.6 1,293,506 - AO356_05825 0.85 +0.0 1,293,506 - AO356_05825 0.85 +0.0 1,293,547 + AO356_05825 0.87 -0.2 1,293,682 + +1.2 1,293,682 + -0.4 1,293,683 - -0.2 1,293,683 - -1.0 1,293,683 - -0.1 1,293,790 + -2.0 1,293,790 + +0.1 1,293,790 + +0.9 1,293,790 + +0.1 1,293,791 - -1.0 1,293,791 - -1.0 1,293,791 - -0.0 1,293,793 + +2.4 1,293,794 - -0.4 1,293,805 + -0.1 1,293,806 - +0.3 1,293,820 + +1.3 1,293,824 + +1.6 1,293,824 + -0.5 1,293,824 + -0.7 1,293,824 + +0.1 1,293,825 - -1.1 1,293,825 - -0.2 1,293,845 - +0.1 1,293,845 - -0.2 1,294,051 + AO356_05830 0.39 +1.0 1,294,052 - AO356_05830 0.39 +1.3 1,294,283 - AO356_05830 0.75 -1.7 1,294,439 + +0.1 1,294,440 - -2.0 1,294,557 + AO356_05835 0.12 -1.5 1,294,557 + AO356_05835 0.12 +1.5 1,294,908 + AO356_05835 0.47 +1.9 1,294,908 + AO356_05835 0.47 +1.0 1,294,908 + AO356_05835 0.47 +1.1 1,294,973 - AO356_05835 0.54 -1.9 1,295,032 - AO356_05835 0.60 +0.6 1,295,032 - AO356_05835 0.60 +1.2 1,295,065 - AO356_05835 0.63 -0.2 1,295,065 - AO356_05835 0.63 +1.2 1,295,109 - AO356_05835 0.68 -0.4 1,295,202 + AO356_05835 0.77 +1.1 1,295,202 + AO356_05835 0.77 +2.1 1,295,202 + AO356_05835 0.77 +0.1 1,295,325 + AO356_05835 0.89 +0.3 1,295,326 - AO356_05835 0.89 -0.5 1,295,558 + AO356_05840 0.39 -0.8 1,295,559 - AO356_05840 0.39 +1.6 1,295,645 + AO356_05840 0.65 +0.6 1,295,645 + AO356_05840 0.65 +0.4 1,295,645 + AO356_05840 0.65 -1.3 1,295,645 + AO356_05840 0.65 +0.6 1,295,645 + AO356_05840 0.65 -0.0 1,295,645 + AO356_05840 0.65 -1.0 1,295,645 + AO356_05840 0.65 +0.5 1,295,646 - AO356_05840 0.65 +0.8 1,295,646 - AO356_05840 0.65 +0.8 1,295,646 - AO356_05840 0.65 -1.2 1,295,646 - AO356_05840 0.65 +0.4 1,295,646 - AO356_05840 0.65 -2.3 1,295,773 + -0.4 1,295,773 + +0.1 1,295,774 - -0.5 1,296,127 - AO356_05845 0.58 -0.8 1,296,406 + -0.2 1,296,406 + -0.8 1,296,406 + -0.2 1,296,407 - +0.1 1,296,407 - -0.0 1,296,407 - +0.3 1,296,407 - -0.2
Or see this region's nucleotide sequence