Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05780

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05770 and AO356_05775 overlap by 4 nucleotidesAO356_05775 and AO356_05780 are separated by 265 nucleotidesAO356_05780 and AO356_05785 are separated by 9 nucleotidesAO356_05785 and AO356_05790 overlap by 8 nucleotidesAO356_05790 and AO356_05795 overlap by 1 nucleotides AO356_05770: AO356_05770 - hypothetical protein, at 1,283,765 to 1,283,947 _05770 AO356_05775: AO356_05775 - hypothetical protein, at 1,283,944 to 1,284,528 _05775 AO356_05780: AO356_05780 - phage tail protein, at 1,284,794 to 1,285,810 _05780 AO356_05785: AO356_05785 - phage tail protein, at 1,285,820 to 1,286,032 _05785 AO356_05790: AO356_05790 - hypothetical protein, at 1,286,025 to 1,286,408 _05790 AO356_05795: AO356_05795 - phage tail protein, at 1,286,408 to 1,288,588 _05795 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -3 -2 -1 0 1at 1283.807 kb on - strand, within AO356_05770at 1283.953 kb on + strandat 1283.953 kb on + strandat 1284.200 kb on + strand, within AO356_05775at 1284.201 kb on - strand, within AO356_05775at 1284.215 kb on + strand, within AO356_05775at 1284.400 kb on + strand, within AO356_05775at 1284.400 kb on + strand, within AO356_05775at 1284.400 kb on + strand, within AO356_05775at 1284.400 kb on + strand, within AO356_05775at 1284.400 kb on + strand, within AO356_05775at 1284.401 kb on - strand, within AO356_05775at 1284.401 kb on - strand, within AO356_05775at 1284.401 kb on - strand, within AO356_05775at 1284.401 kb on - strand, within AO356_05775at 1284.401 kb on - strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.404 kb on + strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.405 kb on - strand, within AO356_05775at 1284.543 kb on - strandat 1284.680 kb on + strandat 1284.681 kb on - strandat 1284.711 kb on + strandat 1284.712 kb on - strandat 1284.838 kb on - strandat 1285.002 kb on - strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.140 kb on + strand, within AO356_05780at 1285.141 kb on - strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.281 kb on + strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.282 kb on - strand, within AO356_05780at 1285.776 kb on + strandat 1285.957 kb on + strand, within AO356_05785at 1285.957 kb on + strand, within AO356_05785at 1285.983 kb on + strand, within AO356_05785at 1286.027 kb on - strandat 1286.228 kb on - strand, within AO356_05790at 1286.228 kb on - strand, within AO356_05790at 1286.337 kb on + strand, within AO356_05790at 1286.350 kb on + strand, within AO356_05790at 1286.413 kb on + strandat 1286.413 kb on + strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,283,807 - AO356_05770 0.23 +0.0
1,283,953 + +0.9
1,283,953 + +0.9
1,284,200 + AO356_05775 0.44 +1.1
1,284,201 - AO356_05775 0.44 -0.3
1,284,215 + AO356_05775 0.46 -0.3
1,284,400 + AO356_05775 0.78 +0.8
1,284,400 + AO356_05775 0.78 -0.9
1,284,400 + AO356_05775 0.78 +0.4
1,284,400 + AO356_05775 0.78 -1.6
1,284,400 + AO356_05775 0.78 -0.2
1,284,401 - AO356_05775 0.78 -0.5
1,284,401 - AO356_05775 0.78 -3.1
1,284,401 - AO356_05775 0.78 -1.0
1,284,401 - AO356_05775 0.78 +0.1
1,284,401 - AO356_05775 0.78 -0.5
1,284,404 + AO356_05775 0.79 +1.0
1,284,404 + AO356_05775 0.79 -1.1
1,284,404 + AO356_05775 0.79 -1.4
1,284,404 + AO356_05775 0.79 -0.5
1,284,404 + AO356_05775 0.79 +0.6
1,284,404 + AO356_05775 0.79 -1.8
1,284,405 - AO356_05775 0.79 +0.5
1,284,405 - AO356_05775 0.79 -0.4
1,284,405 - AO356_05775 0.79 +0.7
1,284,405 - AO356_05775 0.79 +0.2
1,284,405 - AO356_05775 0.79 -1.3
1,284,405 - AO356_05775 0.79 +0.6
1,284,405 - AO356_05775 0.79 +0.1
1,284,543 - +0.5
1,284,680 + +0.7
1,284,681 - +0.7
1,284,711 + -1.6
1,284,712 - -0.3
1,284,838 - -1.6
1,285,002 - AO356_05780 0.20 -0.6
1,285,140 + AO356_05780 0.34 +0.2
1,285,140 + AO356_05780 0.34 +0.6
1,285,140 + AO356_05780 0.34 +0.4
1,285,140 + AO356_05780 0.34 +0.2
1,285,141 - AO356_05780 0.34 -0.8
1,285,281 + AO356_05780 0.48 +0.1
1,285,281 + AO356_05780 0.48 -0.6
1,285,281 + AO356_05780 0.48 +0.6
1,285,282 - AO356_05780 0.48 +0.4
1,285,282 - AO356_05780 0.48 -0.3
1,285,282 - AO356_05780 0.48 -2.6
1,285,282 - AO356_05780 0.48 +1.5
1,285,282 - AO356_05780 0.48 +0.2
1,285,282 - AO356_05780 0.48 +1.2
1,285,282 - AO356_05780 0.48 -0.6
1,285,282 - AO356_05780 0.48 -0.5
1,285,776 + +0.1
1,285,957 + AO356_05785 0.64 -1.3
1,285,957 + AO356_05785 0.64 +0.9
1,285,983 + AO356_05785 0.77 -0.5
1,286,027 - -0.6
1,286,228 - AO356_05790 0.53 -1.2
1,286,228 - AO356_05790 0.53 -0.7
1,286,337 + AO356_05790 0.81 -1.3
1,286,350 + AO356_05790 0.85 +0.0
1,286,413 + -0.8
1,286,413 + -0.1
1,286,414 - +0.8
1,286,414 - +0.4
1,286,414 - -0.0
1,286,550 + -0.8
1,286,550 + -0.2
1,286,550 + -0.6
1,286,550 + +0.8
1,286,550 + +0.2
1,286,551 - -1.0

Or see this region's nucleotide sequence