Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05735

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05725 and AO356_05730 overlap by 11 nucleotidesAO356_05730 and AO356_05735 overlap by 1 nucleotidesAO356_05735 and AO356_05740 are separated by 254 nucleotides AO356_05725: AO356_05725 - baseplate J protein, at 1,275,395 to 1,276,435 _05725 AO356_05730: AO356_05730 - hypothetical protein, at 1,276,425 to 1,276,823 _05730 AO356_05735: AO356_05735 - hypothetical protein, at 1,276,823 to 1,277,332 _05735 AO356_05740: AO356_05740 - baseplate protein, at 1,277,587 to 1,278,627 _05740 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1275.849 kb on + strand, within AO356_05725at 1275.849 kb on + strand, within AO356_05725at 1275.885 kb on + strand, within AO356_05725at 1275.885 kb on + strand, within AO356_05725at 1275.885 kb on + strand, within AO356_05725at 1276.107 kb on + strand, within AO356_05725at 1276.108 kb on - strand, within AO356_05725at 1276.108 kb on - strand, within AO356_05725at 1276.300 kb on - strand, within AO356_05725at 1276.300 kb on - strand, within AO356_05725at 1276.305 kb on + strand, within AO356_05725at 1276.305 kb on + strand, within AO356_05725at 1276.305 kb on + strand, within AO356_05725at 1276.306 kb on - strand, within AO356_05725at 1276.435 kb on + strandat 1276.435 kb on + strandat 1276.435 kb on + strandat 1276.435 kb on + strandat 1276.435 kb on + strandat 1276.436 kb on - strandat 1276.436 kb on - strandat 1276.436 kb on - strandat 1276.436 kb on - strandat 1276.436 kb on - strandat 1276.868 kb on + strandat 1276.868 kb on + strandat 1276.869 kb on - strandat 1277.061 kb on + strand, within AO356_05735at 1277.324 kb on + strandat 1277.325 kb on - strandat 1277.623 kb on - strandat 1277.623 kb on - strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.735 kb on - strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.793 kb on - strand, within AO356_05740at 1277.793 kb on - strand, within AO356_05740at 1277.996 kb on + strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,275,849 + AO356_05725 0.44 +0.4
1,275,849 + AO356_05725 0.44 +0.4
1,275,885 + AO356_05725 0.47 -0.3
1,275,885 + AO356_05725 0.47 -0.5
1,275,885 + AO356_05725 0.47 -0.4
1,276,107 + AO356_05725 0.68 +0.2
1,276,108 - AO356_05725 0.68 +0.2
1,276,108 - AO356_05725 0.68 +1.1
1,276,300 - AO356_05725 0.87 +0.1
1,276,300 - AO356_05725 0.87 -0.4
1,276,305 + AO356_05725 0.87 -0.6
1,276,305 + AO356_05725 0.87 -2.0
1,276,305 + AO356_05725 0.87 +0.1
1,276,306 - AO356_05725 0.88 -0.2
1,276,435 + -2.2
1,276,435 + +1.0
1,276,435 + +0.7
1,276,435 + -1.3
1,276,435 + -0.4
1,276,436 - +0.4
1,276,436 - -0.1
1,276,436 - -0.5
1,276,436 - +0.7
1,276,436 - +0.4
1,276,868 + +0.3
1,276,868 + -0.9
1,276,869 - +1.0
1,277,061 + AO356_05735 0.47 +0.2
1,277,324 + -1.2
1,277,325 - -0.0
1,277,623 - +1.0
1,277,623 - -0.4
1,277,675 + +2.0
1,277,675 + +1.9
1,277,675 + +1.5
1,277,675 + +0.7
1,277,675 + -0.2
1,277,735 - AO356_05740 0.14 -0.4
1,277,792 + AO356_05740 0.20 +1.0
1,277,792 + AO356_05740 0.20 +0.0
1,277,792 + AO356_05740 0.20 -0.7
1,277,792 + AO356_05740 0.20 +0.0
1,277,793 - AO356_05740 0.20 +0.7
1,277,793 - AO356_05740 0.20 +0.2
1,277,996 + AO356_05740 0.39 +0.8
1,278,018 - AO356_05740 0.41 -3.1
1,278,018 - AO356_05740 0.41 +0.6
1,278,018 - AO356_05740 0.41 -1.1
1,278,064 + AO356_05740 0.46 -2.2
1,278,064 + AO356_05740 0.46 +0.4
1,278,064 + AO356_05740 0.46 -0.3
1,278,065 - AO356_05740 0.46 -0.4
1,278,065 - AO356_05740 0.46 +0.5
1,278,065 - AO356_05740 0.46 +0.6
1,278,065 - AO356_05740 0.46 +0.2
1,278,065 - AO356_05740 0.46 +0.6
1,278,065 - AO356_05740 0.46 -0.9

Or see this region's nucleotide sequence