Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04895 and AO356_04900 are separated by 206 nucleotides AO356_04900 and AO356_04905 are separated by 10 nucleotides
AO356_04895: AO356_04895 - porin, at 1,102,088 to 1,103,341
_04895
AO356_04900: AO356_04900 - 4-carboxymuconolactone decarboxylase, at 1,103,548 to 1,103,940
_04900
AO356_04905: AO356_04905 - 3-oxoadipate enol-lactonase, at 1,103,951 to 1,104,766
_04905
Position (kb)
1102
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1101.094 kb on - strand at 1101.199 kb on + strand at 1101.199 kb on + strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.200 kb on - strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.206 kb on + strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.207 kb on - strand at 1101.213 kb on - strand at 1101.213 kb on - strand at 1101.213 kb on - strand at 1101.234 kb on + strand at 1101.234 kb on + strand at 1101.235 kb on - strand at 1101.235 kb on - strand at 1101.235 kb on - strand at 1101.316 kb on + strand at 1101.316 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.341 kb on + strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.342 kb on - strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.345 kb on + strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.346 kb on - strand at 1101.372 kb on - strand at 1101.372 kb on - strand at 1101.810 kb on + strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.811 kb on - strand at 1101.939 kb on + strand at 1102.074 kb on + strand at 1102.718 kb on + strand, within AO356_04895 at 1102.738 kb on + strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1102.779 kb on - strand, within AO356_04895 at 1103.210 kb on + strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.211 kb on - strand, within AO356_04895 at 1103.212 kb on + strand, within AO356_04895 at 1103.213 kb on - strand, within AO356_04895 at 1103.257 kb on + strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.280 kb on - strand at 1103.321 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.339 kb on + strand at 1103.340 kb on - strand at 1103.365 kb on + strand at 1103.366 kb on - strand at 1103.549 kb on + strand at 1103.549 kb on + strand at 1103.550 kb on - strand at 1103.550 kb on - strand at 1103.630 kb on + strand, within AO356_04900 at 1103.630 kb on + strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.631 kb on - strand, within AO356_04900 at 1103.742 kb on + strand, within AO356_04900 at 1103.767 kb on - strand, within AO356_04900 at 1103.903 kb on - strand at 1103.921 kb on + strand at 1103.921 kb on + strand at 1104.036 kb on + strand, within AO356_04905 at 1104.036 kb on + strand, within AO356_04905 at 1104.037 kb on - strand, within AO356_04905
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 1,101,094 - +0.4 1,101,199 + +0.0 1,101,199 + +0.1 1,101,200 - -0.7 1,101,200 - -0.1 1,101,200 - -0.5 1,101,200 - +0.5 1,101,206 + +1.9 1,101,206 + -0.2 1,101,206 + -0.8 1,101,206 + -0.6 1,101,206 + +0.1 1,101,207 - +1.2 1,101,207 - -0.3 1,101,207 - +0.5 1,101,207 - +0.6 1,101,207 - -1.0 1,101,207 - +0.7 1,101,213 - -0.8 1,101,213 - -0.7 1,101,213 - +0.8 1,101,234 + +0.7 1,101,234 + -0.7 1,101,235 - +1.6 1,101,235 - -1.2 1,101,235 - -0.4 1,101,316 + -1.2 1,101,316 + +1.4 1,101,341 + +1.1 1,101,341 + -1.7 1,101,341 + +0.4 1,101,341 + -0.1 1,101,341 + +0.3 1,101,341 + -1.2 1,101,341 + -1.2 1,101,342 - -0.7 1,101,342 - -0.8 1,101,342 - +0.9 1,101,342 - -0.8 1,101,342 - +0.1 1,101,345 + -1.0 1,101,345 + -0.9 1,101,345 + +1.0 1,101,345 + +0.3 1,101,346 - +0.0 1,101,346 - +0.8 1,101,346 - +0.8 1,101,346 - -0.4 1,101,346 - +2.0 1,101,346 - +0.4 1,101,346 - +0.7 1,101,372 - -1.7 1,101,372 - +1.2 1,101,810 + -0.1 1,101,811 - -0.5 1,101,811 - +0.7 1,101,811 - +0.2 1,101,811 - +0.1 1,101,939 + +0.7 1,102,074 + +0.8 1,102,718 + AO356_04895 0.50 -1.4 1,102,738 + AO356_04895 0.52 -2.4 1,102,779 - AO356_04895 0.55 -1.2 1,102,779 - AO356_04895 0.55 -0.5 1,102,779 - AO356_04895 0.55 -1.6 1,103,210 + AO356_04895 0.89 +1.6 1,103,211 - AO356_04895 0.90 +0.1 1,103,211 - AO356_04895 0.90 -0.2 1,103,212 + AO356_04895 0.90 +1.7 1,103,213 - AO356_04895 0.90 +0.8 1,103,257 + +0.9 1,103,280 - +1.1 1,103,280 - -1.4 1,103,280 - +0.8 1,103,321 + -0.7 1,103,339 + -0.4 1,103,339 + -0.2 1,103,339 + +0.6 1,103,340 - +0.1 1,103,365 + +0.5 1,103,366 - +0.7 1,103,549 + +1.3 1,103,549 + +0.3 1,103,550 - +0.9 1,103,550 - -0.2 1,103,630 + AO356_04900 0.21 -0.7 1,103,630 + AO356_04900 0.21 +5.4 1,103,631 - AO356_04900 0.21 -0.2 1,103,631 - AO356_04900 0.21 -0.1 1,103,742 + AO356_04900 0.49 +1.0 1,103,767 - AO356_04900 0.56 -0.1 1,103,903 - -0.0 1,103,921 + +1.2 1,103,921 + -0.6 1,104,036 + AO356_04905 0.10 -0.4 1,104,036 + AO356_04905 0.10 -0.7 1,104,037 - AO356_04905 0.11 +0.3
Or see this region's nucleotide sequence