Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04765

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04760 and AO356_04765 overlap by 4 nucleotidesAO356_04765 and AO356_04770 are separated by 140 nucleotides AO356_04760: AO356_04760 - MFS transporter, at 1,072,136 to 1,073,299 _04760 AO356_04765: AO356_04765 - lactaldehyde reductase, at 1,073,296 to 1,074,444 _04765 AO356_04770: AO356_04770 - hypothetical protein, at 1,074,585 to 1,075,604 _04770 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1072.373 kb on + strand, within AO356_04760at 1072.373 kb on + strand, within AO356_04760at 1072.373 kb on + strand, within AO356_04760at 1072.373 kb on + strand, within AO356_04760at 1072.373 kb on + strand, within AO356_04760at 1072.373 kb on + strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.374 kb on - strand, within AO356_04760at 1072.462 kb on + strand, within AO356_04760at 1072.575 kb on - strand, within AO356_04760at 1072.575 kb on - strand, within AO356_04760at 1072.724 kb on + strand, within AO356_04760at 1072.725 kb on - strand, within AO356_04760at 1072.734 kb on + strand, within AO356_04760at 1072.735 kb on - strand, within AO356_04760at 1072.735 kb on - strand, within AO356_04760at 1072.735 kb on - strand, within AO356_04760at 1072.791 kb on + strand, within AO356_04760at 1072.859 kb on + strand, within AO356_04760at 1072.859 kb on + strand, within AO356_04760at 1072.893 kb on - strand, within AO356_04760at 1072.968 kb on + strand, within AO356_04760at 1072.969 kb on - strand, within AO356_04760at 1073.048 kb on + strand, within AO356_04760at 1073.049 kb on - strand, within AO356_04760at 1073.049 kb on - strand, within AO356_04760at 1073.297 kb on + strandat 1073.297 kb on + strandat 1073.298 kb on - strandat 1073.298 kb on - strandat 1073.478 kb on + strand, within AO356_04765at 1073.479 kb on - strand, within AO356_04765at 1073.518 kb on - strand, within AO356_04765at 1073.518 kb on - strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.584 kb on + strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.585 kb on - strand, within AO356_04765at 1073.714 kb on + strand, within AO356_04765at 1073.715 kb on - strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.840 kb on + strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1073.841 kb on - strand, within AO356_04765at 1074.089 kb on + strand, within AO356_04765at 1074.089 kb on + strand, within AO356_04765at 1074.089 kb on + strand, within AO356_04765at 1074.089 kb on + strand, within AO356_04765at 1074.090 kb on - strand, within AO356_04765at 1074.090 kb on - strand, within AO356_04765at 1074.090 kb on - strand, within AO356_04765at 1074.362 kb on + strandat 1074.363 kb on - strandat 1074.363 kb on - strandat 1074.435 kb on + strandat 1074.436 kb on - strandat 1074.462 kb on - strandat 1074.498 kb on + strandat 1074.603 kb on + strandat 1074.603 kb on + strandat 1074.603 kb on + strandat 1074.603 kb on + strandat 1074.604 kb on - strandat 1074.885 kb on + strand, within AO356_04770at 1074.886 kb on - strand, within AO356_04770at 1074.888 kb on + strand, within AO356_04770at 1075.017 kb on + strand, within AO356_04770at 1075.017 kb on + strand, within AO356_04770at 1075.017 kb on + strand, within AO356_04770at 1075.017 kb on + strand, within AO356_04770at 1075.018 kb on - strand, within AO356_04770at 1075.018 kb on - strand, within AO356_04770at 1075.032 kb on + strand, within AO356_04770at 1075.032 kb on + strand, within AO356_04770at 1075.032 kb on + strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.033 kb on - strand, within AO356_04770at 1075.137 kb on + strand, within AO356_04770at 1075.138 kb on - strand, within AO356_04770at 1075.323 kb on + strand, within AO356_04770at 1075.324 kb on - strand, within AO356_04770at 1075.338 kb on + strand, within AO356_04770

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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1,072,373 + AO356_04760 0.20 +1.7
1,072,373 + AO356_04760 0.20 +0.4
1,072,373 + AO356_04760 0.20 +0.0
1,072,373 + AO356_04760 0.20 +1.3
1,072,373 + AO356_04760 0.20 +0.4
1,072,373 + AO356_04760 0.20 -0.1
1,072,374 - AO356_04760 0.20 -0.3
1,072,374 - AO356_04760 0.20 -0.0
1,072,374 - AO356_04760 0.20 +0.1
1,072,374 - AO356_04760 0.20 +0.1
1,072,374 - AO356_04760 0.20 +1.0
1,072,374 - AO356_04760 0.20 +0.2
1,072,374 - AO356_04760 0.20 +0.3
1,072,462 + AO356_04760 0.28 -0.8
1,072,575 - AO356_04760 0.38 +0.8
1,072,575 - AO356_04760 0.38 -0.9
1,072,724 + AO356_04760 0.51 -0.2
1,072,725 - AO356_04760 0.51 -3.0
1,072,734 + AO356_04760 0.51 -0.9
1,072,735 - AO356_04760 0.51 +0.3
1,072,735 - AO356_04760 0.51 +1.1
1,072,735 - AO356_04760 0.51 -0.8
1,072,791 + AO356_04760 0.56 +0.4
1,072,859 + AO356_04760 0.62 +0.3
1,072,859 + AO356_04760 0.62 +0.0
1,072,893 - AO356_04760 0.65 +0.6
1,072,968 + AO356_04760 0.71 -2.0
1,072,969 - AO356_04760 0.72 +0.3
1,073,048 + AO356_04760 0.78 +0.6
1,073,049 - AO356_04760 0.78 -1.0
1,073,049 - AO356_04760 0.78 -3.6
1,073,297 + +0.4
1,073,297 + +0.4
1,073,298 - -0.5
1,073,298 - -2.9
1,073,478 + AO356_04765 0.16 -1.0
1,073,479 - AO356_04765 0.16 +0.2
1,073,518 - AO356_04765 0.19 -0.9
1,073,518 - AO356_04765 0.19 -1.0
1,073,584 + AO356_04765 0.25 -0.3
1,073,584 + AO356_04765 0.25 +1.1
1,073,584 + AO356_04765 0.25 +0.1
1,073,584 + AO356_04765 0.25 +0.9
1,073,584 + AO356_04765 0.25 +0.0
1,073,584 + AO356_04765 0.25 +0.6
1,073,585 - AO356_04765 0.25 -0.5
1,073,585 - AO356_04765 0.25 +0.4
1,073,585 - AO356_04765 0.25 +1.1
1,073,585 - AO356_04765 0.25 +0.7
1,073,585 - AO356_04765 0.25 +0.7
1,073,585 - AO356_04765 0.25 +1.1
1,073,585 - AO356_04765 0.25 +0.1
1,073,585 - AO356_04765 0.25 +0.5
1,073,585 - AO356_04765 0.25 -1.0
1,073,585 - AO356_04765 0.25 +0.1
1,073,714 + AO356_04765 0.36 -0.6
1,073,715 - AO356_04765 0.36 +0.1
1,073,840 + AO356_04765 0.47 +0.3
1,073,840 + AO356_04765 0.47 -1.1
1,073,840 + AO356_04765 0.47 +0.1
1,073,840 + AO356_04765 0.47 +0.4
1,073,840 + AO356_04765 0.47 -1.3
1,073,840 + AO356_04765 0.47 +0.3
1,073,840 + AO356_04765 0.47 -2.7
1,073,840 + AO356_04765 0.47 -0.7
1,073,840 + AO356_04765 0.47 -1.9
1,073,841 - AO356_04765 0.47 +0.1
1,073,841 - AO356_04765 0.47 -0.6
1,073,841 - AO356_04765 0.47 -0.0
1,073,841 - AO356_04765 0.47 +1.9
1,073,841 - AO356_04765 0.47 +1.4
1,073,841 - AO356_04765 0.47 +0.6
1,073,841 - AO356_04765 0.47 +0.7
1,073,841 - AO356_04765 0.47 -2.0
1,073,841 - AO356_04765 0.47 -1.8
1,073,841 - AO356_04765 0.47 -0.2
1,073,841 - AO356_04765 0.47 -0.6
1,073,841 - AO356_04765 0.47 +0.4
1,073,841 - AO356_04765 0.47 -0.6
1,074,089 + AO356_04765 0.69 -0.3
1,074,089 + AO356_04765 0.69 -0.2
1,074,089 + AO356_04765 0.69 -1.8
1,074,089 + AO356_04765 0.69 +0.2
1,074,090 - AO356_04765 0.69 -0.4
1,074,090 - AO356_04765 0.69 +0.0
1,074,090 - AO356_04765 0.69 -1.3
1,074,362 + -1.5
1,074,363 - -1.1
1,074,363 - +2.2
1,074,435 + +1.1
1,074,436 - +1.4
1,074,462 - -2.0
1,074,498 + -0.1
1,074,603 + -0.8
1,074,603 + +0.6
1,074,603 + +0.0
1,074,603 + -0.4
1,074,604 - -0.5
1,074,885 + AO356_04770 0.29 +0.7
1,074,886 - AO356_04770 0.30 +0.3
1,074,888 + AO356_04770 0.30 -0.8
1,075,017 + AO356_04770 0.42 -1.3
1,075,017 + AO356_04770 0.42 +0.9
1,075,017 + AO356_04770 0.42 -1.1
1,075,017 + AO356_04770 0.42 -0.0
1,075,018 - AO356_04770 0.42 -0.6
1,075,018 - AO356_04770 0.42 +0.6
1,075,032 + AO356_04770 0.44 -1.3
1,075,032 + AO356_04770 0.44 +0.7
1,075,032 + AO356_04770 0.44 -0.6
1,075,033 - AO356_04770 0.44 +0.8
1,075,033 - AO356_04770 0.44 -0.2
1,075,033 - AO356_04770 0.44 +1.1
1,075,033 - AO356_04770 0.44 +2.5
1,075,033 - AO356_04770 0.44 -1.8
1,075,033 - AO356_04770 0.44 -0.8
1,075,137 + AO356_04770 0.54 -0.5
1,075,138 - AO356_04770 0.54 +1.1
1,075,323 + AO356_04770 0.72 +1.4
1,075,324 - AO356_04770 0.72 +0.5
1,075,338 + AO356_04770 0.74 +0.4

Or see this region's nucleotide sequence