Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04050 and AO356_04055 are separated by 422 nucleotides AO356_04055 and AO356_04060 are separated by 8 nucleotides AO356_04060 and AO356_04065 are separated by 348 nucleotides
AO356_04050: AO356_04050 - ATP-dependent DNA helicase RecQ, at 901,191 to 903,317
_04050
AO356_04055: AO356_04055 - hypothetical protein, at 903,740 to 904,327
_04055
AO356_04060: AO356_04060 - hypothetical protein, at 904,336 to 904,731
_04060
AO356_04065: AO356_04065 - type I secretion target, at 905,080 to 913,647
_04065
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.962 kb on - strand, within AO356_04050 at 902.983 kb on + strand, within AO356_04050 at 903.243 kb on - strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.318 kb on - strand at 903.318 kb on - strand at 903.390 kb on + strand at 903.391 kb on - strand at 903.391 kb on - strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.445 kb on - strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.665 kb on + strand at 903.666 kb on - strand at 903.685 kb on + strand at 903.686 kb on - strand at 903.701 kb on + strand at 903.702 kb on - strand at 903.720 kb on - strand at 903.739 kb on - strand at 903.816 kb on - strand, within AO356_04055 at 903.816 kb on - strand, within AO356_04055 at 903.914 kb on + strand, within AO356_04055 at 904.383 kb on - strand, within AO356_04060 at 904.504 kb on + strand, within AO356_04060 at 904.552 kb on + strand, within AO356_04060 at 904.553 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.592 kb on - strand, within AO356_04060 at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.696 kb on + strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.697 kb on - strand at 904.698 kb on + strand at 904.699 kb on - strand at 904.699 kb on - strand at 904.764 kb on + strand at 904.765 kb on - strand at 904.765 kb on - strand at 904.765 kb on - strand at 904.988 kb on + strand at 904.988 kb on + strand at 904.988 kb on + strand at 904.989 kb on - strand at 904.989 kb on - strand at 905.024 kb on + strand at 905.024 kb on + strand at 905.024 kb on + strand at 905.025 kb on - strand at 905.025 kb on - strand at 905.025 kb on - strand at 905.088 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.306 kb on + strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand at 905.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 902,962 - AO356_04050 0.83 +1.6 902,983 + AO356_04050 0.84 +1.2 903,243 - +1.9 903,317 + +2.7 903,317 + +0.7 903,317 + +2.1 903,318 - -1.7 903,318 - +1.2 903,390 + +1.8 903,391 - -2.3 903,391 - -1.7 903,444 + +2.3 903,444 + +1.6 903,444 + +1.3 903,444 + +1.8 903,444 + +1.3 903,445 - -2.3 903,619 + -1.8 903,619 + -1.2 903,619 + -0.0 903,619 + +0.6 903,619 + -0.9 903,665 + +1.2 903,666 - -3.2 903,685 + -0.0 903,686 - -3.0 903,701 + +0.6 903,702 - -0.4 903,720 - -1.5 903,739 - -2.0 903,816 - AO356_04055 0.13 -1.7 903,816 - AO356_04055 0.13 -0.9 903,914 + AO356_04055 0.30 -0.1 904,383 - AO356_04060 0.12 -0.1 904,504 + AO356_04060 0.42 +2.3 904,552 + AO356_04060 0.55 +0.7 904,553 - AO356_04060 0.55 -1.0 904,592 - AO356_04060 0.65 +1.8 904,592 - AO356_04060 0.65 -1.3 904,592 - AO356_04060 0.65 -0.9 904,696 + -1.0 904,696 + +0.1 904,696 + +0.5 904,696 + -0.6 904,696 + -0.2 904,696 + -1.4 904,697 - -0.3 904,697 - +0.2 904,697 - +0.7 904,697 - -2.1 904,697 - -2.3 904,698 + +0.2 904,699 - -1.8 904,699 - -0.7 904,764 + +0.5 904,765 - +0.8 904,765 - -0.9 904,765 - -0.7 904,988 + +0.8 904,988 + +0.3 904,988 + +1.5 904,989 - -1.6 904,989 - -0.8 905,024 + -0.3 905,024 + -1.0 905,024 + +0.5 905,025 - +0.9 905,025 - +0.5 905,025 - -0.2 905,088 + +0.1 905,306 + -0.6 905,306 + +0.7 905,306 + +0.1 905,306 + +0.4 905,306 + +0.2 905,307 - +0.3 905,307 - -0.5 905,307 - +0.7 905,307 - +1.3 905,307 - +0.2
Or see this region's nucleotide sequence