Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04040 and AO356_04045 are separated by 119 nucleotides AO356_04045 and AO356_04050 are separated by 117 nucleotides AO356_04050 and AO356_04055 are separated by 422 nucleotides
AO356_04040: AO356_04040 - peptidoglycan-binding protein LysM, at 898,555 to 900,519
_04040
AO356_04045: AO356_04045 - MarR family transcriptional regulator, at 900,639 to 901,073
_04045
AO356_04050: AO356_04050 - ATP-dependent DNA helicase RecQ, at 901,191 to 903,317
_04050
AO356_04055: AO356_04055 - hypothetical protein, at 903,740 to 904,327
_04055
Position (kb) 901
902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 900.252 kb on + strand, within AO356_04040 at 900.536 kb on + strand at 900.537 kb on - strand at 900.570 kb on - strand at 900.570 kb on - strand at 900.579 kb on + strand at 900.579 kb on + strand at 900.582 kb on + strand at 900.582 kb on + strand at 900.583 kb on - strand at 900.583 kb on - strand at 900.589 kb on + strand at 900.589 kb on + strand at 900.589 kb on + strand at 900.589 kb on + strand at 900.589 kb on + strand at 900.590 kb on - strand at 900.591 kb on + strand at 900.591 kb on + strand at 900.591 kb on + strand at 900.591 kb on + strand at 900.591 kb on + strand at 900.591 kb on + strand at 900.592 kb on - strand at 900.592 kb on - strand at 900.592 kb on - strand at 900.592 kb on - strand at 900.592 kb on - strand at 900.592 kb on - strand at 900.592 kb on - strand at 901.111 kb on + strand at 901.114 kb on + strand at 901.122 kb on + strand at 901.123 kb on - strand at 901.212 kb on + strand at 901.212 kb on + strand at 901.323 kb on + strand at 901.409 kb on - strand, within AO356_04050 at 901.409 kb on - strand, within AO356_04050 at 901.873 kb on + strand, within AO356_04050 at 901.874 kb on - strand, within AO356_04050 at 902.177 kb on - strand, within AO356_04050 at 902.381 kb on - strand, within AO356_04050 at 902.383 kb on + strand, within AO356_04050 at 902.384 kb on - strand, within AO356_04050 at 902.384 kb on - strand, within AO356_04050 at 902.384 kb on - strand, within AO356_04050 at 902.512 kb on + strand, within AO356_04050 at 902.513 kb on - strand, within AO356_04050 at 902.545 kb on + strand, within AO356_04050 at 902.617 kb on + strand, within AO356_04050 at 902.617 kb on + strand, within AO356_04050 at 902.618 kb on - strand, within AO356_04050 at 902.618 kb on - strand, within AO356_04050 at 902.962 kb on - strand, within AO356_04050 at 902.983 kb on + strand, within AO356_04050 at 903.243 kb on - strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.317 kb on + strand at 903.318 kb on - strand at 903.318 kb on - strand at 903.390 kb on + strand at 903.391 kb on - strand at 903.391 kb on - strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.444 kb on + strand at 903.445 kb on - strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.619 kb on + strand at 903.665 kb on + strand at 903.666 kb on - strand at 903.685 kb on + strand at 903.686 kb on - strand at 903.701 kb on + strand at 903.702 kb on - strand at 903.720 kb on - strand at 903.739 kb on - strand at 903.816 kb on - strand, within AO356_04055 at 903.816 kb on - strand, within AO356_04055 at 903.914 kb on + strand, within AO356_04055
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 900,252 + AO356_04040 0.86 -0.1 900,536 + +0.6 900,537 - +0.1 900,570 - -0.5 900,570 - +0.3 900,579 + -1.1 900,579 + +0.0 900,582 + +0.6 900,582 + +1.7 900,583 - -0.0 900,583 - +0.5 900,589 + -0.4 900,589 + -0.4 900,589 + +1.3 900,589 + -1.0 900,589 + +0.4 900,590 - -0.7 900,591 + +0.1 900,591 + +0.8 900,591 + +0.5 900,591 + +0.8 900,591 + +0.7 900,591 + +0.3 900,592 - +0.9 900,592 - -0.7 900,592 - +0.7 900,592 - -0.0 900,592 - +0.4 900,592 - -2.0 900,592 - -0.1 901,111 + -0.8 901,114 + +1.7 901,122 + -1.0 901,123 - +0.3 901,212 + +2.1 901,212 + +0.9 901,323 + +1.3 901,409 - AO356_04050 0.10 +1.3 901,409 - AO356_04050 0.10 +2.5 901,873 + AO356_04050 0.32 +2.2 901,874 - AO356_04050 0.32 +2.3 902,177 - AO356_04050 0.46 +1.1 902,381 - AO356_04050 0.56 +2.4 902,383 + AO356_04050 0.56 +1.8 902,384 - AO356_04050 0.56 +2.0 902,384 - AO356_04050 0.56 +2.4 902,384 - AO356_04050 0.56 +2.1 902,512 + AO356_04050 0.62 +1.9 902,513 - AO356_04050 0.62 +2.5 902,545 + AO356_04050 0.64 +0.9 902,617 + AO356_04050 0.67 +1.1 902,617 + AO356_04050 0.67 +2.9 902,618 - AO356_04050 0.67 +2.0 902,618 - AO356_04050 0.67 +1.9 902,962 - AO356_04050 0.83 +1.6 902,983 + AO356_04050 0.84 +1.2 903,243 - +1.9 903,317 + +2.7 903,317 + +0.7 903,317 + +2.1 903,318 - -1.7 903,318 - +1.2 903,390 + +1.8 903,391 - -2.3 903,391 - -1.7 903,444 + +2.3 903,444 + +1.6 903,444 + +1.3 903,444 + +1.8 903,444 + +1.3 903,445 - -2.3 903,619 + -1.8 903,619 + -1.2 903,619 + -0.0 903,619 + +0.6 903,619 + -0.9 903,665 + +1.2 903,666 - -3.2 903,685 + -0.0 903,686 - -3.0 903,701 + +0.6 903,702 - -0.4 903,720 - -1.5 903,739 - -2.0 903,816 - AO356_04055 0.13 -1.7 903,816 - AO356_04055 0.13 -0.9 903,914 + AO356_04055 0.30 -0.1
Or see this region's nucleotide sequence