Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03985 and AO356_03990 are separated by 195 nucleotides AO356_03990 and AO356_03995 are separated by 119 nucleotides
AO356_03985: AO356_03985 - L-phenylalanine transaminase (EC 2.6.1.57) <small>(from data)</small>, at 887,309 to 888,502
_03985
AO356_03990: AO356_03990 - nitroreductase, at 888,698 to 889,261
_03990
AO356_03995: AO356_03995 - potassium transporter TrkH, at 889,381 to 890,835
_03995
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 887.756 kb on + strand, within AO356_03985 at 887.756 kb on + strand, within AO356_03985 at 887.757 kb on - strand, within AO356_03985 at 887.770 kb on + strand, within AO356_03985 at 887.770 kb on + strand, within AO356_03985 at 887.835 kb on + strand, within AO356_03985 at 887.835 kb on + strand, within AO356_03985 at 887.836 kb on - strand, within AO356_03985 at 887.836 kb on - strand, within AO356_03985 at 887.836 kb on - strand, within AO356_03985 at 887.948 kb on + strand, within AO356_03985 at 888.357 kb on - strand, within AO356_03985 at 888.410 kb on + strand at 888.410 kb on + strand at 888.410 kb on + strand at 888.410 kb on + strand at 888.410 kb on + strand at 888.411 kb on - strand at 888.411 kb on - strand at 888.411 kb on - strand at 888.411 kb on - strand at 888.501 kb on - strand at 888.501 kb on - strand at 888.501 kb on - strand at 888.700 kb on - strand at 888.781 kb on - strand, within AO356_03990 at 888.781 kb on - strand, within AO356_03990 at 888.843 kb on + strand, within AO356_03990 at 888.888 kb on + strand, within AO356_03990 at 889.289 kb on + strand at 889.290 kb on - strand at 889.290 kb on - strand at 889.322 kb on + strand at 889.323 kb on - strand at 889.527 kb on + strand, within AO356_03995 at 889.527 kb on + strand, within AO356_03995 at 889.528 kb on - strand, within AO356_03995 at 889.528 kb on - strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.600 kb on + strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.601 kb on - strand, within AO356_03995 at 889.635 kb on + strand, within AO356_03995 at 889.635 kb on + strand, within AO356_03995 at 889.635 kb on + strand, within AO356_03995 at 889.635 kb on + strand, within AO356_03995 at 889.636 kb on - strand, within AO356_03995 at 889.636 kb on - strand, within AO356_03995 at 889.636 kb on - strand, within AO356_03995 at 889.678 kb on + strand, within AO356_03995 at 889.679 kb on - strand, within AO356_03995 at 889.679 kb on - strand, within AO356_03995 at 889.679 kb on - strand, within AO356_03995 at 889.946 kb on - strand, within AO356_03995 at 889.946 kb on - strand, within AO356_03995 at 890.146 kb on + strand, within AO356_03995 at 890.146 kb on + strand, within AO356_03995 at 890.146 kb on + strand, within AO356_03995 at 890.146 kb on + strand, within AO356_03995 at 890.146 kb on + strand, within AO356_03995 at 890.147 kb on - strand, within AO356_03995 at 890.147 kb on - strand, within AO356_03995 at 890.147 kb on - strand, within AO356_03995 at 890.147 kb on - strand, within AO356_03995 at 890.252 kb on - strand, within AO356_03995
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 887,756 + AO356_03985 0.37 -0.0 887,756 + AO356_03985 0.37 -0.0 887,757 - AO356_03985 0.38 +0.4 887,770 + AO356_03985 0.39 -1.1 887,770 + AO356_03985 0.39 +0.9 887,835 + AO356_03985 0.44 +0.9 887,835 + AO356_03985 0.44 -0.0 887,836 - AO356_03985 0.44 -0.3 887,836 - AO356_03985 0.44 +0.3 887,836 - AO356_03985 0.44 +0.3 887,948 + AO356_03985 0.54 +0.8 888,357 - AO356_03985 0.88 -0.8 888,410 + -0.5 888,410 + -0.1 888,410 + +1.7 888,410 + +0.3 888,410 + +0.7 888,411 - -1.1 888,411 - -1.4 888,411 - -1.3 888,411 - -2.2 888,501 - -0.2 888,501 - +1.1 888,501 - +1.3 888,700 - -0.3 888,781 - AO356_03990 0.15 -0.4 888,781 - AO356_03990 0.15 -1.1 888,843 + AO356_03990 0.26 +1.7 888,888 + AO356_03990 0.34 -0.2 889,289 + +0.7 889,290 - +0.5 889,290 - +0.7 889,322 + +1.2 889,323 - +0.6 889,527 + AO356_03995 0.10 +2.6 889,527 + AO356_03995 0.10 +2.0 889,528 - AO356_03995 0.10 +2.7 889,528 - AO356_03995 0.10 -0.3 889,600 + AO356_03995 0.15 +2.3 889,600 + AO356_03995 0.15 +3.3 889,600 + AO356_03995 0.15 +1.6 889,600 + AO356_03995 0.15 +1.2 889,600 + AO356_03995 0.15 +1.2 889,600 + AO356_03995 0.15 +2.9 889,600 + AO356_03995 0.15 +3.5 889,600 + AO356_03995 0.15 +0.6 889,600 + AO356_03995 0.15 +1.9 889,601 - AO356_03995 0.15 +1.2 889,601 - AO356_03995 0.15 +0.3 889,601 - AO356_03995 0.15 +3.2 889,601 - AO356_03995 0.15 +2.0 889,601 - AO356_03995 0.15 +2.3 889,601 - AO356_03995 0.15 +2.6 889,601 - AO356_03995 0.15 +1.8 889,635 + AO356_03995 0.17 +2.8 889,635 + AO356_03995 0.17 +2.7 889,635 + AO356_03995 0.17 +2.3 889,635 + AO356_03995 0.17 +2.4 889,636 - AO356_03995 0.18 +1.0 889,636 - AO356_03995 0.18 +0.2 889,636 - AO356_03995 0.18 +0.0 889,678 + AO356_03995 0.20 +2.6 889,679 - AO356_03995 0.20 +2.3 889,679 - AO356_03995 0.20 +3.3 889,679 - AO356_03995 0.20 +2.7 889,946 - AO356_03995 0.39 -0.0 889,946 - AO356_03995 0.39 -0.4 890,146 + AO356_03995 0.53 +1.1 890,146 + AO356_03995 0.53 +1.3 890,146 + AO356_03995 0.53 +0.4 890,146 + AO356_03995 0.53 +2.3 890,146 + AO356_03995 0.53 -1.3 890,147 - AO356_03995 0.53 +2.0 890,147 - AO356_03995 0.53 +2.6 890,147 - AO356_03995 0.53 +3.2 890,147 - AO356_03995 0.53 +0.9 890,252 - AO356_03995 0.60 +1.4
Or see this region's nucleotide sequence