Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03460

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03455 and AO356_03460 are separated by 28 nucleotidesAO356_03460 and AO356_03465 are separated by 13 nucleotides AO356_03455: AO356_03455 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 767,719 to 769,926 _03455 AO356_03460: AO356_03460 - aspartate aminotransferase, at 769,955 to 771,067 _03460 AO356_03465: AO356_03465 - prephenate dehydratase, at 771,081 to 772,175 _03465 Position (kb) 769 770 771 772Strain fitness (log2 ratio) -1 0 1 2 3at 769.053 kb on - strand, within AO356_03455at 769.053 kb on - strand, within AO356_03455at 769.382 kb on - strand, within AO356_03455at 769.590 kb on + strand, within AO356_03455at 769.926 kb on + strandat 770.050 kb on - strandat 770.050 kb on - strandat 770.050 kb on - strandat 770.097 kb on + strand, within AO356_03460at 770.098 kb on - strand, within AO356_03460at 770.236 kb on - strand, within AO356_03460at 770.374 kb on - strand, within AO356_03460at 770.461 kb on - strand, within AO356_03460at 770.461 kb on - strand, within AO356_03460at 770.470 kb on - strand, within AO356_03460at 770.470 kb on - strand, within AO356_03460at 770.470 kb on - strand, within AO356_03460at 770.692 kb on - strand, within AO356_03460at 770.743 kb on - strand, within AO356_03460at 770.743 kb on - strand, within AO356_03460at 771.012 kb on + strandat 771.216 kb on - strand, within AO356_03465

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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769,053 - AO356_03455 0.60 -0.6
769,053 - AO356_03455 0.60 -0.6
769,382 - AO356_03455 0.75 +1.4
769,590 + AO356_03455 0.85 +1.6
769,926 + +3.0
770,050 - -0.2
770,050 - -0.4
770,050 - +1.1
770,097 + AO356_03460 0.13 +0.2
770,098 - AO356_03460 0.13 -0.8
770,236 - AO356_03460 0.25 +0.4
770,374 - AO356_03460 0.38 +0.7
770,461 - AO356_03460 0.45 -0.3
770,461 - AO356_03460 0.45 -0.8
770,470 - AO356_03460 0.46 +1.6
770,470 - AO356_03460 0.46 +0.1
770,470 - AO356_03460 0.46 -0.4
770,692 - AO356_03460 0.66 -0.5
770,743 - AO356_03460 0.71 +1.4
770,743 - AO356_03460 0.71 +0.3
771,012 + -0.4
771,216 - AO356_03465 0.12 +1.5

Or see this region's nucleotide sequence