Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03420

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03415 and AO356_03420 are separated by 17 nucleotidesAO356_03420 and AO356_03425 are separated by 618 nucleotides AO356_03415: AO356_03415 - oxidoreductase, at 759,884 to 760,834 _03415 AO356_03420: AO356_03420 - UDP-N-acetyl-D-glucosamine dehydrogenase, at 760,852 to 762,165 _03420 AO356_03425: AO356_03425 - chain-length determining protein, at 762,784 to 763,839 _03425 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 760.026 kb on + strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.098 kb on + strand, within AO356_03415at 760.099 kb on - strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.179 kb on + strand, within AO356_03415at 760.266 kb on + strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.292 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.590 kb on + strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.740 kb on + strandat 760.757 kb on - strandat 760.799 kb on - strandat 760.799 kb on - strandat 760.864 kb on - strandat 760.886 kb on + strandat 760.937 kb on + strandat 760.937 kb on + strandat 760.937 kb on + strandat 760.938 kb on - strandat 760.980 kb on - strandat 761.136 kb on + strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.156 kb on + strand, within AO356_03420at 761.157 kb on - strand, within AO356_03420at 761.157 kb on - strand, within AO356_03420at 761.240 kb on + strand, within AO356_03420at 761.241 kb on - strand, within AO356_03420at 761.289 kb on + strand, within AO356_03420at 761.290 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.325 kb on - strand, within AO356_03420at 761.325 kb on - strand, within AO356_03420at 761.372 kb on + strand, within AO356_03420at 761.373 kb on - strand, within AO356_03420at 761.375 kb on + strand, within AO356_03420at 761.376 kb on - strand, within AO356_03420at 761.428 kb on - strand, within AO356_03420at 761.570 kb on + strand, within AO356_03420at 761.570 kb on + strand, within AO356_03420at 761.605 kb on - strand, within AO356_03420at 761.732 kb on - strand, within AO356_03420at 761.828 kb on - strand, within AO356_03420at 762.089 kb on + strandat 762.154 kb on + strandat 762.180 kb on - strandat 762.198 kb on - strandat 762.211 kb on + strandat 762.410 kb on + strandat 762.458 kb on + strandat 762.458 kb on + strandat 762.467 kb on + strandat 762.467 kb on + strandat 762.467 kb on + strandat 762.468 kb on - strandat 762.468 kb on - strandat 762.468 kb on - strandat 762.471 kb on + strandat 762.495 kb on + strandat 762.495 kb on + strandat 762.496 kb on - strandat 762.496 kb on - strandat 762.496 kb on - strandat 762.496 kb on - strandat 762.501 kb on - strandat 762.564 kb on - strandat 762.610 kb on + strandat 762.610 kb on + strandat 762.610 kb on + strandat 762.611 kb on - strandat 762.659 kb on + strandat 762.706 kb on - strandat 762.741 kb on + strandat 762.758 kb on - strandat 763.104 kb on + strand, within AO356_03425at 763.123 kb on + strand, within AO356_03425at 763.123 kb on + strand, within AO356_03425at 763.124 kb on - strand, within AO356_03425at 763.124 kb on - strand, within AO356_03425at 763.125 kb on + strand, within AO356_03425at 763.125 kb on + strand, within AO356_03425at 763.147 kb on + strand, within AO356_03425

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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760,026 + AO356_03415 0.15 +2.8
760,027 - AO356_03415 0.15 +1.8
760,027 - AO356_03415 0.15 +1.2
760,027 - AO356_03415 0.15 +2.3
760,098 + AO356_03415 0.23 -0.7
760,099 - AO356_03415 0.23 -0.6
760,163 + AO356_03415 0.29 +2.0
760,163 + AO356_03415 0.29 -0.7
760,163 + AO356_03415 0.29 -2.3
760,164 - AO356_03415 0.29 +1.9
760,164 - AO356_03415 0.29 +3.1
760,164 - AO356_03415 0.29 +0.8
760,179 + AO356_03415 0.31 +1.9
760,266 + AO356_03415 0.40 +1.6
760,267 - AO356_03415 0.40 -0.4
760,267 - AO356_03415 0.40 +2.1
760,267 - AO356_03415 0.40 +3.0
760,292 + AO356_03415 0.43 +1.5
760,354 + AO356_03415 0.49 +1.3
760,354 + AO356_03415 0.49 +0.1
760,354 + AO356_03415 0.49 +3.2
760,354 + AO356_03415 0.49 +2.8
760,354 + AO356_03415 0.49 +1.2
760,354 + AO356_03415 0.49 +1.1
760,354 + AO356_03415 0.49 +2.4
760,355 - AO356_03415 0.50 +1.4
760,355 - AO356_03415 0.50 +2.6
760,355 - AO356_03415 0.50 +1.1
760,355 - AO356_03415 0.50 +3.1
760,359 + AO356_03415 0.50 +3.2
760,359 + AO356_03415 0.50 +1.4
760,359 + AO356_03415 0.50 +0.3
760,360 - AO356_03415 0.50 -1.8
760,360 - AO356_03415 0.50 +1.9
760,360 - AO356_03415 0.50 +0.8
760,360 - AO356_03415 0.50 +0.1
760,360 - AO356_03415 0.50 +1.3
760,360 - AO356_03415 0.50 +1.9
760,360 - AO356_03415 0.50 +2.8
760,378 - AO356_03415 0.52 +2.1
760,378 - AO356_03415 0.52 +0.3
760,590 + AO356_03415 0.74 +1.6
760,591 - AO356_03415 0.74 +0.6
760,591 - AO356_03415 0.74 +0.9
760,591 - AO356_03415 0.74 +2.1
760,591 - AO356_03415 0.74 +3.0
760,615 - AO356_03415 0.77 +0.3
760,615 - AO356_03415 0.77 +0.5
760,615 - AO356_03415 0.77 +0.3
760,740 + +0.6
760,757 - +1.6
760,799 - +1.2
760,799 - -0.7
760,864 - +1.6
760,886 + +1.2
760,937 + +0.7
760,937 + +0.6
760,937 + +0.6
760,938 - -0.9
760,980 - -1.7
761,136 + AO356_03420 0.22 +2.5
761,137 - AO356_03420 0.22 +1.1
761,137 - AO356_03420 0.22 +0.1
761,137 - AO356_03420 0.22 +2.8
761,143 + AO356_03420 0.22 -0.7
761,143 + AO356_03420 0.22 +1.8
761,143 + AO356_03420 0.22 -1.5
761,143 + AO356_03420 0.22 -0.4
761,143 + AO356_03420 0.22 +1.6
761,144 - AO356_03420 0.22 +1.6
761,144 - AO356_03420 0.22 -0.4
761,144 - AO356_03420 0.22 +0.8
761,156 + AO356_03420 0.23 +2.1
761,157 - AO356_03420 0.23 -0.6
761,157 - AO356_03420 0.23 +0.1
761,240 + AO356_03420 0.30 +0.2
761,241 - AO356_03420 0.30 +0.1
761,289 + AO356_03420 0.33 +0.5
761,290 - AO356_03420 0.33 +0.4
761,301 - AO356_03420 0.34 +0.7
761,301 - AO356_03420 0.34 +0.1
761,301 - AO356_03420 0.34 +0.8
761,325 - AO356_03420 0.36 +0.6
761,325 - AO356_03420 0.36 +0.8
761,372 + AO356_03420 0.40 +1.3
761,373 - AO356_03420 0.40 +2.2
761,375 + AO356_03420 0.40 +3.3
761,376 - AO356_03420 0.40 +3.8
761,428 - AO356_03420 0.44 -1.3
761,570 + AO356_03420 0.55 +1.6
761,570 + AO356_03420 0.55 +1.6
761,605 - AO356_03420 0.57 -1.2
761,732 - AO356_03420 0.67 -1.2
761,828 - AO356_03420 0.74 +0.2
762,089 + +0.1
762,154 + +3.8
762,180 - -0.8
762,198 - +0.2
762,211 + +0.2
762,410 + +2.8
762,458 + +1.9
762,458 + +2.4
762,467 + +1.1
762,467 + +1.0
762,467 + +1.6
762,468 - -0.4
762,468 - -0.3
762,468 - -1.3
762,471 + +0.4
762,495 + +1.2
762,495 + +2.9
762,496 - +0.1
762,496 - -2.9
762,496 - -0.0
762,496 - -1.4
762,501 - -1.0
762,564 - -1.4
762,610 + -0.1
762,610 + +2.0
762,610 + +1.8
762,611 - -0.5
762,659 + +1.2
762,706 - +0.8
762,741 + +0.9
762,758 - -0.7
763,104 + AO356_03425 0.30 +0.5
763,123 + AO356_03425 0.32 +0.3
763,123 + AO356_03425 0.32 -0.4
763,124 - AO356_03425 0.32 +2.1
763,124 - AO356_03425 0.32 -0.1
763,125 + AO356_03425 0.32 +0.6
763,125 + AO356_03425 0.32 +1.6
763,147 + AO356_03425 0.34 +0.6

Or see this region's nucleotide sequence