Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02725 and AO356_02730 are separated by 66 nucleotides AO356_02730 and AO356_02735 are separated by 24 nucleotides
AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099
_02725
AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217
_02730
AO356_02735: AO356_02735 - type III secretion regulator InvE, at 599,242 to 600,348
_02735
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -1
0
1
2 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.342 kb on + strand, within AO356_02725 at 597.267 kb on - strand at 597.267 kb on - strand at 597.494 kb on + strand, within AO356_02730 at 597.495 kb on - strand, within AO356_02730 at 597.923 kb on + strand, within AO356_02730 at 597.924 kb on - strand, within AO356_02730 at 598.056 kb on - strand, within AO356_02730 at 598.529 kb on + strand, within AO356_02730 at 598.529 kb on + strand, within AO356_02730 at 598.530 kb on - strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.561 kb on + strand, within AO356_02730 at 598.562 kb on - strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.608 kb on + strand, within AO356_02730 at 598.609 kb on - strand, within AO356_02730 at 598.670 kb on + strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 598.671 kb on - strand, within AO356_02730 at 599.726 kb on + strand, within AO356_02735 at 599.727 kb on - strand, within AO356_02735 at 599.747 kb on + strand, within AO356_02735 at 599.790 kb on - strand, within AO356_02735
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 596,202 - AO356_02725 0.30 +1.3 596,202 - AO356_02725 0.30 +0.2 596,202 - AO356_02725 0.30 +1.6 596,342 + AO356_02725 0.41 +0.5 597,267 - -0.9 597,267 - +0.7 597,494 + AO356_02730 0.16 -0.6 597,495 - AO356_02730 0.16 +0.3 597,923 + AO356_02730 0.37 -1.4 597,924 - AO356_02730 0.37 +0.1 598,056 - AO356_02730 0.43 -0.9 598,529 + AO356_02730 0.66 +1.1 598,529 + AO356_02730 0.66 +0.7 598,530 - AO356_02730 0.66 +0.0 598,561 + AO356_02730 0.68 +0.4 598,561 + AO356_02730 0.68 +0.6 598,561 + AO356_02730 0.68 +2.1 598,561 + AO356_02730 0.68 -1.2 598,561 + AO356_02730 0.68 -1.1 598,561 + AO356_02730 0.68 +0.2 598,561 + AO356_02730 0.68 +0.8 598,562 - AO356_02730 0.68 +0.5 598,608 + AO356_02730 0.70 -0.2 598,608 + AO356_02730 0.70 +0.7 598,608 + AO356_02730 0.70 -0.3 598,609 - AO356_02730 0.70 +0.0 598,670 + AO356_02730 0.73 +0.4 598,671 - AO356_02730 0.73 +0.4 598,671 - AO356_02730 0.73 +0.9 598,671 - AO356_02730 0.73 +0.2 599,726 + AO356_02735 0.44 +0.4 599,727 - AO356_02735 0.44 -0.1 599,747 + AO356_02735 0.46 +0.9 599,790 - AO356_02735 0.50 -0.9
Or see this region's nucleotide sequence