Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02705 and AO356_02710 overlap by 8 nucleotides AO356_02710 and AO356_02715 overlap by 4 nucleotides AO356_02715 and AO356_02720 overlap by 4 nucleotides AO356_02720 and AO356_02725 overlap by 17 nucleotides
AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589
_02705
AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511
_02710
AO356_02715: AO356_02715 - type III secretion effector protein, at 594,508 to 595,377
_02715
AO356_02720: AO356_02720 - type III secretion protein, at 595,374 to 595,829
_02720
AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099
_02725
Position (kb) 594
595
596 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.513 kb on + strand, within AO356_02705 at 593.514 kb on - strand, within AO356_02705 at 593.879 kb on + strand, within AO356_02710 at 593.879 kb on + strand, within AO356_02710 at 593.879 kb on + strand, within AO356_02710 at 593.880 kb on - strand, within AO356_02710 at 593.917 kb on - strand, within AO356_02710 at 594.095 kb on + strand, within AO356_02710 at 594.095 kb on + strand, within AO356_02710 at 594.259 kb on + strand, within AO356_02710 at 594.260 kb on - strand, within AO356_02710 at 594.315 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.384 kb on + strand, within AO356_02710 at 594.657 kb on + strand, within AO356_02715 at 594.715 kb on + strand, within AO356_02715 at 594.715 kb on + strand, within AO356_02715 at 594.716 kb on - strand, within AO356_02715 at 594.739 kb on - strand, within AO356_02715 at 594.820 kb on + strand, within AO356_02715 at 594.821 kb on - strand, within AO356_02715 at 595.113 kb on + strand, within AO356_02715 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 596.123 kb on + strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.342 kb on + strand, within AO356_02725
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 593,513 + AO356_02705 0.88 -0.2 593,514 - AO356_02705 0.88 -1.3 593,879 + AO356_02710 0.32 +1.5 593,879 + AO356_02710 0.32 -1.4 593,879 + AO356_02710 0.32 +0.8 593,880 - AO356_02710 0.32 -1.2 593,917 - AO356_02710 0.36 -0.0 594,095 + AO356_02710 0.55 +0.7 594,095 + AO356_02710 0.55 -0.4 594,259 + AO356_02710 0.73 -1.3 594,260 - AO356_02710 0.73 -0.6 594,315 + AO356_02710 0.79 -0.6 594,384 + AO356_02710 0.86 +0.4 594,384 + AO356_02710 0.86 +1.3 594,384 + AO356_02710 0.86 -1.0 594,657 + AO356_02715 0.17 +1.1 594,715 + AO356_02715 0.24 +0.4 594,715 + AO356_02715 0.24 -2.4 594,716 - AO356_02715 0.24 +1.7 594,739 - AO356_02715 0.27 +0.1 594,820 + AO356_02715 0.36 +0.1 594,821 - AO356_02715 0.36 -0.6 595,113 + AO356_02715 0.70 +0.5 595,472 - AO356_02720 0.21 -0.8 595,472 - AO356_02720 0.21 -1.5 595,472 - AO356_02720 0.21 -1.5 595,472 - AO356_02720 0.21 -0.2 596,123 + AO356_02725 0.24 -0.8 596,124 - AO356_02725 0.24 +0.5 596,124 - AO356_02725 0.24 +1.9 596,202 - AO356_02725 0.30 +1.3 596,202 - AO356_02725 0.30 +0.2 596,202 - AO356_02725 0.30 +1.6 596,342 + AO356_02725 0.41 +0.5
Or see this region's nucleotide sequence