Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02520

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02510 and AO356_02515 are separated by 142 nucleotidesAO356_02515 and AO356_02520 overlap by 55 nucleotidesAO356_02520 and AO356_02525 are separated by 338 nucleotidesAO356_02525 and AO356_02530 are separated by 199 nucleotides AO356_02510: AO356_02510 - DNA polymerase III subunit gamma/tau, at 544,013 to 546,088 _02510 AO356_02515: AO356_02515 - amino acid ABC transporter substrate-binding protein, at 546,231 to 547,001 _02515 AO356_02520: AO356_02520 - diguanylate cyclase, at 546,947 to 548,695 _02520 AO356_02525: AO356_02525 - Cro/Cl family transcriptional regulator, at 549,034 to 549,348 _02525 AO356_02530: AO356_02530 - hypothetical protein, at 549,548 to 550,054 _02530 Position (kb) 546 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 546.167 kb on + strandat 546.167 kb on + strandat 546.168 kb on - strandat 546.168 kb on - strandat 546.168 kb on - strandat 546.176 kb on + strandat 546.176 kb on + strandat 546.177 kb on - strandat 546.177 kb on - strandat 546.177 kb on - strandat 546.177 kb on - strandat 546.181 kb on + strandat 546.181 kb on + strandat 546.182 kb on - strandat 546.182 kb on - strandat 546.212 kb on + strandat 546.212 kb on + strandat 546.231 kb on - strandat 546.231 kb on - strandat 546.231 kb on - strandat 546.231 kb on - strandat 546.231 kb on - strandat 546.403 kb on + strand, within AO356_02515at 546.403 kb on + strand, within AO356_02515at 546.403 kb on + strand, within AO356_02515at 546.403 kb on + strand, within AO356_02515at 546.486 kb on + strand, within AO356_02515at 546.486 kb on + strand, within AO356_02515at 546.486 kb on + strand, within AO356_02515at 546.487 kb on - strand, within AO356_02515at 546.487 kb on - strand, within AO356_02515at 546.487 kb on - strand, within AO356_02515at 546.487 kb on - strand, within AO356_02515at 546.487 kb on - strand, within AO356_02515at 546.523 kb on - strand, within AO356_02515at 546.523 kb on - strand, within AO356_02515at 546.758 kb on + strand, within AO356_02515at 546.759 kb on - strand, within AO356_02515at 546.794 kb on + strand, within AO356_02515at 546.795 kb on - strand, within AO356_02515at 546.852 kb on + strand, within AO356_02515at 546.852 kb on + strand, within AO356_02515at 546.853 kb on - strand, within AO356_02515at 546.853 kb on - strand, within AO356_02515at 546.901 kb on + strand, within AO356_02515at 546.901 kb on + strand, within AO356_02515at 546.902 kb on - strand, within AO356_02515at 546.902 kb on - strand, within AO356_02515at 546.948 kb on + strandat 546.949 kb on - strandat 546.949 kb on - strandat 546.949 kb on - strandat 547.059 kb on - strandat 547.092 kb on + strandat 547.092 kb on + strandat 547.092 kb on + strandat 547.093 kb on - strandat 547.516 kb on + strand, within AO356_02520at 547.516 kb on + strand, within AO356_02520at 547.517 kb on - strand, within AO356_02520at 547.517 kb on - strand, within AO356_02520at 547.720 kb on + strand, within AO356_02520at 547.721 kb on - strand, within AO356_02520at 547.721 kb on - strand, within AO356_02520at 547.794 kb on + strand, within AO356_02520at 547.794 kb on + strand, within AO356_02520at 547.795 kb on - strand, within AO356_02520at 547.795 kb on - strand, within AO356_02520at 547.795 kb on - strand, within AO356_02520at 547.869 kb on + strand, within AO356_02520at 547.869 kb on + strand, within AO356_02520at 547.870 kb on - strand, within AO356_02520at 547.870 kb on - strand, within AO356_02520at 547.870 kb on - strand, within AO356_02520at 547.870 kb on - strand, within AO356_02520at 547.980 kb on + strand, within AO356_02520at 547.981 kb on - strand, within AO356_02520at 547.981 kb on - strand, within AO356_02520at 548.166 kb on + strand, within AO356_02520at 548.271 kb on - strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.274 kb on + strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.275 kb on - strand, within AO356_02520at 548.278 kb on + strand, within AO356_02520at 548.278 kb on + strand, within AO356_02520at 548.278 kb on + strand, within AO356_02520at 548.278 kb on + strand, within AO356_02520at 548.279 kb on - strand, within AO356_02520at 548.279 kb on - strand, within AO356_02520at 548.279 kb on - strand, within AO356_02520at 548.279 kb on - strand, within AO356_02520at 548.279 kb on - strand, within AO356_02520at 548.377 kb on - strand, within AO356_02520at 548.619 kb on + strandat 548.620 kb on - strandat 548.620 kb on - strandat 548.620 kb on - strandat 548.620 kb on - strandat 548.690 kb on - strandat 548.690 kb on - strandat 548.770 kb on + strandat 548.770 kb on + strandat 548.770 kb on + strandat 548.771 kb on - strandat 548.771 kb on - strandat 548.845 kb on + strandat 548.845 kb on + strandat 548.845 kb on + strandat 548.846 kb on - strandat 548.846 kb on - strandat 549.090 kb on + strand, within AO356_02525at 549.091 kb on - strand, within AO356_02525at 549.160 kb on + strand, within AO356_02525at 549.160 kb on + strand, within AO356_02525at 549.160 kb on + strand, within AO356_02525at 549.161 kb on - strand, within AO356_02525at 549.161 kb on - strand, within AO356_02525at 549.262 kb on + strand, within AO356_02525at 549.262 kb on + strand, within AO356_02525at 549.263 kb on - strand, within AO356_02525at 549.279 kb on - strand, within AO356_02525at 549.279 kb on - strand, within AO356_02525at 549.279 kb on - strand, within AO356_02525at 549.438 kb on + strandat 549.438 kb on + strandat 549.439 kb on - strandat 549.439 kb on - strandat 549.439 kb on - strandat 549.439 kb on - strandat 549.475 kb on + strandat 549.553 kb on + strandat 549.606 kb on - strand, within AO356_02530at 549.621 kb on + strand, within AO356_02530at 549.621 kb on + strand, within AO356_02530at 549.622 kb on - strand, within AO356_02530at 549.622 kb on - strand, within AO356_02530

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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546,167 + +1.7
546,167 + +1.6
546,168 - +0.9
546,168 - +0.8
546,168 - +1.0
546,176 + +1.5
546,176 + +1.1
546,177 - -0.8
546,177 - +0.4
546,177 - -0.7
546,177 - -0.5
546,181 + +1.5
546,181 + +0.7
546,182 - -2.7
546,182 - -0.0
546,212 + +0.3
546,212 + +1.4
546,231 - -2.6
546,231 - +0.3
546,231 - +0.8
546,231 - +0.5
546,231 - -0.6
546,403 + AO356_02515 0.22 +0.6
546,403 + AO356_02515 0.22 +0.3
546,403 + AO356_02515 0.22 -0.5
546,403 + AO356_02515 0.22 +0.3
546,486 + AO356_02515 0.33 +1.6
546,486 + AO356_02515 0.33 -0.3
546,486 + AO356_02515 0.33 +0.5
546,487 - AO356_02515 0.33 +0.1
546,487 - AO356_02515 0.33 +1.1
546,487 - AO356_02515 0.33 -0.4
546,487 - AO356_02515 0.33 +0.4
546,487 - AO356_02515 0.33 +1.1
546,523 - AO356_02515 0.38 -0.1
546,523 - AO356_02515 0.38 +1.1
546,758 + AO356_02515 0.68 -0.4
546,759 - AO356_02515 0.68 +0.3
546,794 + AO356_02515 0.73 +0.1
546,795 - AO356_02515 0.73 -0.1
546,852 + AO356_02515 0.81 +1.0
546,852 + AO356_02515 0.81 +1.0
546,853 - AO356_02515 0.81 +0.3
546,853 - AO356_02515 0.81 +0.9
546,901 + AO356_02515 0.87 +0.4
546,901 + AO356_02515 0.87 +0.4
546,902 - AO356_02515 0.87 +0.5
546,902 - AO356_02515 0.87 +0.8
546,948 + -1.0
546,949 - +1.8
546,949 - +0.5
546,949 - +1.2
547,059 - +0.6
547,092 + +1.2
547,092 + +1.1
547,092 + +0.7
547,093 - -0.2
547,516 + AO356_02520 0.33 +1.3
547,516 + AO356_02520 0.33 +1.7
547,517 - AO356_02520 0.33 +1.1
547,517 - AO356_02520 0.33 +0.4
547,720 + AO356_02520 0.44 +0.7
547,721 - AO356_02520 0.44 -1.9
547,721 - AO356_02520 0.44 +0.8
547,794 + AO356_02520 0.48 -0.4
547,794 + AO356_02520 0.48 +1.2
547,795 - AO356_02520 0.48 +0.5
547,795 - AO356_02520 0.48 +1.4
547,795 - AO356_02520 0.48 +0.5
547,869 + AO356_02520 0.53 -0.2
547,869 + AO356_02520 0.53 +0.8
547,870 - AO356_02520 0.53 -0.9
547,870 - AO356_02520 0.53 +0.8
547,870 - AO356_02520 0.53 +1.2
547,870 - AO356_02520 0.53 -0.3
547,980 + AO356_02520 0.59 +1.5
547,981 - AO356_02520 0.59 +1.6
547,981 - AO356_02520 0.59 +0.1
548,166 + AO356_02520 0.70 +1.2
548,271 - AO356_02520 0.76 +0.2
548,274 + AO356_02520 0.76 +2.4
548,274 + AO356_02520 0.76 +1.0
548,274 + AO356_02520 0.76 +1.0
548,274 + AO356_02520 0.76 -1.3
548,274 + AO356_02520 0.76 -0.3
548,274 + AO356_02520 0.76 +0.6
548,274 + AO356_02520 0.76 +1.6
548,274 + AO356_02520 0.76 +0.0
548,275 - AO356_02520 0.76 +0.6
548,275 - AO356_02520 0.76 +0.9
548,275 - AO356_02520 0.76 +0.5
548,275 - AO356_02520 0.76 +0.4
548,275 - AO356_02520 0.76 +0.1
548,275 - AO356_02520 0.76 +1.0
548,275 - AO356_02520 0.76 +2.4
548,275 - AO356_02520 0.76 +0.9
548,275 - AO356_02520 0.76 +0.5
548,275 - AO356_02520 0.76 +1.0
548,275 - AO356_02520 0.76 +0.9
548,278 + AO356_02520 0.76 -0.1
548,278 + AO356_02520 0.76 +1.3
548,278 + AO356_02520 0.76 +1.4
548,278 + AO356_02520 0.76 +1.2
548,279 - AO356_02520 0.76 +0.8
548,279 - AO356_02520 0.76 +1.2
548,279 - AO356_02520 0.76 +1.1
548,279 - AO356_02520 0.76 +1.3
548,279 - AO356_02520 0.76 +0.4
548,377 - AO356_02520 0.82 +1.1
548,619 + +0.4
548,620 - -0.2
548,620 - +1.9
548,620 - +0.2
548,620 - +1.4
548,690 - +0.6
548,690 - +1.2
548,770 + +0.7
548,770 + +0.0
548,770 + +0.1
548,771 - +0.5
548,771 - -2.2
548,845 + +1.3
548,845 + +0.6
548,845 + +0.9
548,846 - +0.1
548,846 - -1.1
549,090 + AO356_02525 0.18 +0.7
549,091 - AO356_02525 0.18 -2.2
549,160 + AO356_02525 0.40 -0.4
549,160 + AO356_02525 0.40 +0.5
549,160 + AO356_02525 0.40 +0.0
549,161 - AO356_02525 0.40 -2.4
549,161 - AO356_02525 0.40 -0.4
549,262 + AO356_02525 0.72 +0.4
549,262 + AO356_02525 0.72 +0.8
549,263 - AO356_02525 0.73 -0.8
549,279 - AO356_02525 0.78 -0.7
549,279 - AO356_02525 0.78 +0.5
549,279 - AO356_02525 0.78 -0.1
549,438 + +0.3
549,438 + -1.9
549,439 - +0.3
549,439 - -1.5
549,439 - +0.1
549,439 - -1.5
549,475 + +0.1
549,553 + +0.6
549,606 - AO356_02530 0.11 -0.1
549,621 + AO356_02530 0.14 +0.2
549,621 + AO356_02530 0.14 -1.7
549,622 - AO356_02530 0.15 -1.9
549,622 - AO356_02530 0.15 -2.6

Or see this region's nucleotide sequence