Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02425

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02420 and AO356_02425 are separated by 482 nucleotidesAO356_02425 and AO356_02430 overlap by 1 nucleotidesAO356_02430 and AO356_02435 are separated by 5 nucleotidesAO356_02435 and AO356_02440 overlap by 4 nucleotides AO356_02420: AO356_02420 - cytochrome C oxidase Cbb3, at 527,243 to 528,196 _02420 AO356_02425: AO356_02425 - cytochrome C oxidase Cbb3, at 528,679 to 530,121 _02425 AO356_02430: AO356_02430 - cytochrome C oxidase Cbb3, at 530,121 to 530,729 _02430 AO356_02435: AO356_02435 - cytochrome oxidase, at 530,735 to 530,920 _02435 AO356_02440: AO356_02440 - cytochrome C oxidase Cbb3, at 530,917 to 531,900 _02440 Position (kb) 528 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 527.852 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.856 kb on + strand, within AO356_02420at 527.857 kb on - strand, within AO356_02420at 527.857 kb on - strand, within AO356_02420at 527.857 kb on - strand, within AO356_02420at 527.857 kb on - strand, within AO356_02420at 528.021 kb on - strand, within AO356_02420at 528.021 kb on - strand, within AO356_02420at 528.131 kb on + strandat 528.131 kb on + strandat 528.131 kb on + strandat 528.137 kb on + strandat 528.137 kb on + strandat 528.138 kb on - strandat 528.138 kb on - strandat 528.195 kb on - strandat 528.310 kb on + strandat 528.310 kb on + strandat 528.310 kb on + strandat 528.310 kb on + strandat 528.311 kb on - strandat 528.311 kb on - strandat 528.651 kb on + strandat 528.652 kb on - strandat 528.676 kb on - strandat 528.676 kb on - strandat 528.706 kb on + strandat 528.708 kb on + strandat 528.708 kb on + strandat 528.709 kb on - strandat 528.709 kb on - strandat 528.709 kb on - strandat 528.712 kb on + strandat 528.712 kb on + strandat 528.712 kb on + strandat 528.713 kb on - strandat 528.713 kb on - strandat 528.714 kb on + strandat 528.714 kb on + strandat 528.715 kb on - strandat 528.715 kb on - strandat 528.715 kb on - strandat 528.720 kb on - strandat 528.720 kb on - strandat 528.913 kb on + strand, within AO356_02425at 528.913 kb on + strand, within AO356_02425at 528.916 kb on + strand, within AO356_02425at 528.916 kb on + strand, within AO356_02425at 528.917 kb on - strand, within AO356_02425at 528.917 kb on - strand, within AO356_02425at 529.048 kb on + strand, within AO356_02425at 529.075 kb on - strand, within AO356_02425at 529.153 kb on + strand, within AO356_02425at 529.153 kb on + strand, within AO356_02425at 529.153 kb on + strand, within AO356_02425at 529.153 kb on + strand, within AO356_02425at 529.153 kb on + strand, within AO356_02425at 529.294 kb on + strand, within AO356_02425at 529.349 kb on - strand, within AO356_02425at 529.349 kb on - strand, within AO356_02425at 529.350 kb on + strand, within AO356_02425at 529.351 kb on + strand, within AO356_02425at 529.351 kb on + strand, within AO356_02425at 529.351 kb on + strand, within AO356_02425at 529.385 kb on - strand, within AO356_02425at 529.385 kb on - strand, within AO356_02425at 529.385 kb on - strand, within AO356_02425at 529.391 kb on - strand, within AO356_02425at 529.432 kb on + strand, within AO356_02425at 529.432 kb on + strand, within AO356_02425at 529.462 kb on + strand, within AO356_02425at 529.462 kb on + strand, within AO356_02425at 529.578 kb on + strand, within AO356_02425at 529.578 kb on + strand, within AO356_02425at 529.579 kb on - strand, within AO356_02425at 529.694 kb on - strand, within AO356_02425at 529.718 kb on + strand, within AO356_02425at 529.864 kb on + strand, within AO356_02425at 529.864 kb on + strand, within AO356_02425at 529.864 kb on + strand, within AO356_02425at 529.864 kb on + strand, within AO356_02425at 529.865 kb on - strand, within AO356_02425at 529.943 kb on - strand, within AO356_02425at 529.943 kb on - strand, within AO356_02425at 529.943 kb on - strand, within AO356_02425at 529.988 kb on + strandat 529.989 kb on - strandat 529.989 kb on - strandat 530.039 kb on - strandat 530.105 kb on + strandat 530.295 kb on + strand, within AO356_02430at 530.295 kb on + strand, within AO356_02430at 530.493 kb on + strand, within AO356_02430at 530.493 kb on + strand, within AO356_02430at 530.493 kb on + strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.494 kb on - strand, within AO356_02430at 530.616 kb on + strand, within AO356_02430at 530.617 kb on - strand, within AO356_02430at 530.617 kb on - strand, within AO356_02430at 530.688 kb on + strandat 530.688 kb on + strandat 530.688 kb on + strandat 530.902 kb on + strandat 530.902 kb on + strandat 530.902 kb on + strandat 530.903 kb on - strandat 530.939 kb on - strandat 530.939 kb on - strandat 530.939 kb on - strandat 530.962 kb on - strandat 531.064 kb on + strand, within AO356_02440at 531.065 kb on - strand, within AO356_02440at 531.065 kb on - strand, within AO356_02440

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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527,852 + AO356_02420 0.64 -0.5
527,856 + AO356_02420 0.64 -1.0
527,856 + AO356_02420 0.64 -2.1
527,856 + AO356_02420 0.64 -0.3
527,856 + AO356_02420 0.64 +0.3
527,856 + AO356_02420 0.64 -0.1
527,856 + AO356_02420 0.64 +0.8
527,857 - AO356_02420 0.64 -0.4
527,857 - AO356_02420 0.64 +0.1
527,857 - AO356_02420 0.64 +0.4
527,857 - AO356_02420 0.64 +0.4
528,021 - AO356_02420 0.82 +0.4
528,021 - AO356_02420 0.82 +0.4
528,131 + +0.2
528,131 + -1.5
528,131 + +1.0
528,137 + -0.5
528,137 + -0.5
528,138 - -1.2
528,138 - +0.3
528,195 - +0.1
528,310 + -0.7
528,310 + -0.5
528,310 + -0.1
528,310 + +0.1
528,311 - +0.9
528,311 - +1.4
528,651 + +1.2
528,652 - +0.1
528,676 - +0.9
528,676 - +1.3
528,706 + +0.5
528,708 + +0.6
528,708 + +0.8
528,709 - -0.1
528,709 - +0.0
528,709 - +0.2
528,712 + +0.6
528,712 + +2.0
528,712 + +1.0
528,713 - -0.1
528,713 - +0.4
528,714 + +0.9
528,714 + +0.6
528,715 - +2.0
528,715 - +2.3
528,715 - +1.0
528,720 - +1.0
528,720 - +2.7
528,913 + AO356_02425 0.16 +1.1
528,913 + AO356_02425 0.16 +2.1
528,916 + AO356_02425 0.16 +0.6
528,916 + AO356_02425 0.16 -0.0
528,917 - AO356_02425 0.16 +1.9
528,917 - AO356_02425 0.16 -0.5
529,048 + AO356_02425 0.26 +1.4
529,075 - AO356_02425 0.27 +0.5
529,153 + AO356_02425 0.33 +2.0
529,153 + AO356_02425 0.33 +0.1
529,153 + AO356_02425 0.33 -0.8
529,153 + AO356_02425 0.33 -0.5
529,153 + AO356_02425 0.33 +1.7
529,294 + AO356_02425 0.43 +0.6
529,349 - AO356_02425 0.46 +1.1
529,349 - AO356_02425 0.46 +0.4
529,350 + AO356_02425 0.47 +0.9
529,351 + AO356_02425 0.47 +1.2
529,351 + AO356_02425 0.47 +1.6
529,351 + AO356_02425 0.47 -0.4
529,385 - AO356_02425 0.49 +0.9
529,385 - AO356_02425 0.49 -0.4
529,385 - AO356_02425 0.49 +1.4
529,391 - AO356_02425 0.49 -0.5
529,432 + AO356_02425 0.52 +1.1
529,432 + AO356_02425 0.52 +0.9
529,462 + AO356_02425 0.54 +1.8
529,462 + AO356_02425 0.54 +1.1
529,578 + AO356_02425 0.62 +0.6
529,578 + AO356_02425 0.62 +0.8
529,579 - AO356_02425 0.62 +0.6
529,694 - AO356_02425 0.70 +1.6
529,718 + AO356_02425 0.72 +4.8
529,864 + AO356_02425 0.82 +0.4
529,864 + AO356_02425 0.82 +0.7
529,864 + AO356_02425 0.82 +2.0
529,864 + AO356_02425 0.82 +1.5
529,865 - AO356_02425 0.82 +1.9
529,943 - AO356_02425 0.88 +0.5
529,943 - AO356_02425 0.88 +1.3
529,943 - AO356_02425 0.88 +1.1
529,988 + +1.2
529,989 - +2.2
529,989 - +1.5
530,039 - +0.8
530,105 + +0.5
530,295 + AO356_02430 0.29 +2.7
530,295 + AO356_02430 0.29 -0.5
530,493 + AO356_02430 0.61 +0.2
530,493 + AO356_02430 0.61 +1.0
530,493 + AO356_02430 0.61 +0.3
530,494 - AO356_02430 0.61 -0.5
530,494 - AO356_02430 0.61 +1.2
530,494 - AO356_02430 0.61 -1.1
530,494 - AO356_02430 0.61 +0.1
530,494 - AO356_02430 0.61 -0.3
530,494 - AO356_02430 0.61 +0.2
530,494 - AO356_02430 0.61 +2.1
530,494 - AO356_02430 0.61 +1.3
530,616 + AO356_02430 0.81 +1.6
530,617 - AO356_02430 0.81 +0.6
530,617 - AO356_02430 0.81 +0.5
530,688 + +1.2
530,688 + +1.7
530,688 + +1.5
530,902 + +0.5
530,902 + +1.2
530,902 + -0.2
530,903 - +1.5
530,939 - +0.9
530,939 - +1.1
530,939 - -0.4
530,962 - +1.7
531,064 + AO356_02440 0.15 +0.7
531,065 - AO356_02440 0.15 +0.8
531,065 - AO356_02440 0.15 -0.7

Or see this region's nucleotide sequence