Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02290

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02285 and AO356_02290 are separated by 171 nucleotidesAO356_02290 and AO356_02295 are separated by 241 nucleotidesAO356_02295 and AO356_02300 are separated by 10 nucleotides AO356_02285: AO356_02285 - beta-hexosaminidase, at 494,844 to 495,854 _02285 AO356_02290: AO356_02290 - TetR family transcriptional regulator, at 496,026 to 496,733 _02290 AO356_02295: AO356_02295 - LexA family transcriptional regulator, at 496,975 to 497,583 _02295 AO356_02300: AO356_02300 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 497,594 to 498,067 _02300 Position (kb) 496 497Strain fitness (log2 ratio) -2 -1 0 1 2 3at 495.208 kb on + strand, within AO356_02285at 495.209 kb on - strand, within AO356_02285at 495.209 kb on - strand, within AO356_02285at 495.479 kb on - strand, within AO356_02285at 495.568 kb on + strand, within AO356_02285at 495.568 kb on + strand, within AO356_02285at 495.569 kb on - strand, within AO356_02285at 495.669 kb on + strand, within AO356_02285at 495.670 kb on - strand, within AO356_02285at 495.762 kb on + strandat 495.854 kb on + strandat 495.855 kb on - strandat 495.855 kb on - strandat 495.865 kb on + strandat 495.865 kb on + strandat 495.866 kb on - strandat 495.868 kb on + strandat 495.869 kb on - strandat 495.944 kb on + strandat 495.945 kb on - strandat 495.945 kb on - strandat 495.988 kb on - strandat 495.993 kb on - strandat 496.314 kb on - strand, within AO356_02290at 496.314 kb on - strand, within AO356_02290at 496.314 kb on - strand, within AO356_02290at 496.316 kb on - strand, within AO356_02290at 496.316 kb on - strand, within AO356_02290at 496.337 kb on - strand, within AO356_02290at 496.485 kb on - strand, within AO356_02290at 496.485 kb on - strand, within AO356_02290at 496.769 kb on - strandat 496.769 kb on - strandat 496.827 kb on + strandat 496.827 kb on + strandat 496.827 kb on + strandat 496.828 kb on - strandat 496.831 kb on + strandat 496.831 kb on + strandat 496.831 kb on + strandat 496.832 kb on - strandat 496.832 kb on - strandat 496.933 kb on + strandat 496.935 kb on + strandat 496.937 kb on + strandat 496.954 kb on + strandat 496.979 kb on + strandat 497.581 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.593 kb on + strandat 497.594 kb on - strandat 497.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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495,208 + AO356_02285 0.36 +1.1
495,209 - AO356_02285 0.36 -0.6
495,209 - AO356_02285 0.36 +0.0
495,479 - AO356_02285 0.63 -0.7
495,568 + AO356_02285 0.72 +0.9
495,568 + AO356_02285 0.72 +0.1
495,569 - AO356_02285 0.72 +0.6
495,669 + AO356_02285 0.82 -0.1
495,670 - AO356_02285 0.82 -0.2
495,762 + -0.2
495,854 + -0.8
495,855 - -0.0
495,855 - +0.5
495,865 + -0.2
495,865 + +0.0
495,866 - +0.3
495,868 + +0.5
495,869 - -2.1
495,944 + +0.5
495,945 - +0.1
495,945 - +0.7
495,988 - +1.4
495,993 - -0.6
496,314 - AO356_02290 0.41 -0.5
496,314 - AO356_02290 0.41 -0.8
496,314 - AO356_02290 0.41 -0.4
496,316 - AO356_02290 0.41 +2.6
496,316 - AO356_02290 0.41 +0.5
496,337 - AO356_02290 0.44 +3.3
496,485 - AO356_02290 0.65 +0.6
496,485 - AO356_02290 0.65 +2.5
496,769 - +0.7
496,769 - -0.2
496,827 + -2.2
496,827 + -0.6
496,827 + -0.5
496,828 - +1.7
496,831 + +1.3
496,831 + +1.2
496,831 + +0.4
496,832 - +1.4
496,832 - +0.1
496,933 + -1.1
496,935 + +0.4
496,937 + -0.3
496,954 + -0.6
496,979 + +2.2
497,581 + -0.3
497,593 + +0.9
497,593 + -0.3
497,593 + -0.1
497,593 + -0.1
497,593 + -0.2
497,593 + +0.5
497,593 + -0.9
497,593 + +0.2
497,594 - +0.2
497,594 - +0.4

Or see this region's nucleotide sequence