Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01515

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01510 and AO356_01515 overlap by 17 nucleotidesAO356_01515 and AO356_01520 are separated by 70 nucleotides AO356_01510: AO356_01510 - glutamine synthetase, at 341,188 to 342,540 _01510 AO356_01515: AO356_01515 - N-formylglutamate amidohydrolase, at 342,524 to 343,276 _01515 AO356_01520: AO356_01520 - porin, at 343,347 to 344,696 _01520 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 341.764 kb on + strand, within AO356_01510at 341.764 kb on + strand, within AO356_01510at 341.764 kb on + strand, within AO356_01510at 341.764 kb on + strand, within AO356_01510at 341.765 kb on - strand, within AO356_01510at 342.025 kb on + strand, within AO356_01510at 342.026 kb on - strand, within AO356_01510at 342.026 kb on - strand, within AO356_01510at 342.070 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.106 kb on + strand, within AO356_01510at 342.107 kb on - strand, within AO356_01510at 342.194 kb on - strand, within AO356_01510at 342.194 kb on - strand, within AO356_01510at 342.318 kb on - strand, within AO356_01510at 342.318 kb on - strand, within AO356_01510at 342.360 kb on + strand, within AO356_01510at 342.455 kb on - strandat 342.455 kb on - strandat 342.523 kb on + strandat 342.523 kb on + strandat 342.523 kb on + strandat 342.523 kb on + strandat 342.523 kb on + strandat 342.524 kb on - strandat 342.535 kb on + strandat 342.535 kb on + strandat 342.535 kb on + strandat 342.535 kb on + strandat 342.536 kb on - strandat 342.536 kb on - strandat 342.560 kb on + strandat 342.575 kb on + strandat 342.773 kb on + strand, within AO356_01515at 342.773 kb on + strand, within AO356_01515at 342.773 kb on + strand, within AO356_01515at 342.773 kb on + strand, within AO356_01515at 342.845 kb on + strand, within AO356_01515at 342.845 kb on + strand, within AO356_01515at 342.845 kb on + strand, within AO356_01515at 342.972 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.010 kb on + strand, within AO356_01515at 343.011 kb on - strand, within AO356_01515at 343.011 kb on - strand, within AO356_01515at 343.011 kb on - strand, within AO356_01515at 343.011 kb on - strand, within AO356_01515at 343.127 kb on + strand, within AO356_01515at 343.128 kb on - strand, within AO356_01515at 343.256 kb on + strandat 343.256 kb on + strandat 343.257 kb on - strandat 343.257 kb on - strandat 343.257 kb on - strandat 343.321 kb on + strandat 343.321 kb on + strandat 343.321 kb on + strandat 343.321 kb on + strandat 343.321 kb on + strandat 343.321 kb on + strandat 343.322 kb on - strandat 343.322 kb on - strandat 343.322 kb on - strandat 343.322 kb on - strandat 343.323 kb on + strandat 343.323 kb on + strandat 343.414 kb on + strandat 343.414 kb on + strandat 343.414 kb on + strandat 343.415 kb on - strandat 343.416 kb on + strandat 343.458 kb on + strandat 343.458 kb on + strandat 343.459 kb on - strandat 343.459 kb on - strandat 343.459 kb on - strandat 343.459 kb on - strandat 343.464 kb on + strandat 343.465 kb on - strandat 343.503 kb on + strand, within AO356_01520at 343.503 kb on + strand, within AO356_01520at 343.504 kb on - strand, within AO356_01520at 343.504 kb on - strand, within AO356_01520at 343.545 kb on + strand, within AO356_01520at 343.588 kb on - strand, within AO356_01520at 343.588 kb on - strand, within AO356_01520at 343.656 kb on + strand, within AO356_01520at 343.657 kb on - strand, within AO356_01520at 343.680 kb on + strand, within AO356_01520at 343.680 kb on + strand, within AO356_01520at 343.680 kb on + strand, within AO356_01520at 343.681 kb on - strand, within AO356_01520at 343.857 kb on + strand, within AO356_01520at 343.857 kb on + strand, within AO356_01520at 343.858 kb on - strand, within AO356_01520at 343.858 kb on - strand, within AO356_01520at 344.160 kb on + strand, within AO356_01520at 344.161 kb on - strand, within AO356_01520at 344.161 kb on - strand, within AO356_01520

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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341,764 + AO356_01510 0.43 -1.2
341,764 + AO356_01510 0.43 +1.1
341,764 + AO356_01510 0.43 -0.5
341,764 + AO356_01510 0.43 +0.1
341,765 - AO356_01510 0.43 -0.6
342,025 + AO356_01510 0.62 +0.4
342,026 - AO356_01510 0.62 -0.5
342,026 - AO356_01510 0.62 -0.2
342,070 + AO356_01510 0.65 +0.3
342,106 + AO356_01510 0.68 +0.4
342,106 + AO356_01510 0.68 +1.4
342,106 + AO356_01510 0.68 +1.8
342,106 + AO356_01510 0.68 +1.1
342,106 + AO356_01510 0.68 +1.4
342,106 + AO356_01510 0.68 +1.5
342,106 + AO356_01510 0.68 +1.2
342,106 + AO356_01510 0.68 +0.4
342,107 - AO356_01510 0.68 -0.3
342,194 - AO356_01510 0.74 -0.0
342,194 - AO356_01510 0.74 +0.9
342,318 - AO356_01510 0.84 -0.2
342,318 - AO356_01510 0.84 -0.2
342,360 + AO356_01510 0.87 +1.2
342,455 - -0.5
342,455 - +0.8
342,523 + +0.7
342,523 + +0.6
342,523 + +1.1
342,523 + +0.4
342,523 + +1.4
342,524 - -1.7
342,535 + +0.3
342,535 + +0.2
342,535 + +0.3
342,535 + +2.4
342,536 - +0.8
342,536 - -1.4
342,560 + -0.6
342,575 + -0.8
342,773 + AO356_01515 0.33 +0.7
342,773 + AO356_01515 0.33 +0.5
342,773 + AO356_01515 0.33 -1.0
342,773 + AO356_01515 0.33 -0.5
342,845 + AO356_01515 0.43 +1.4
342,845 + AO356_01515 0.43 -0.0
342,845 + AO356_01515 0.43 +1.4
342,972 + AO356_01515 0.59 +2.1
343,010 + AO356_01515 0.65 +1.1
343,010 + AO356_01515 0.65 -0.1
343,010 + AO356_01515 0.65 +1.6
343,010 + AO356_01515 0.65 +1.9
343,010 + AO356_01515 0.65 -0.7
343,010 + AO356_01515 0.65 +2.4
343,011 - AO356_01515 0.65 -0.9
343,011 - AO356_01515 0.65 +1.2
343,011 - AO356_01515 0.65 +0.6
343,011 - AO356_01515 0.65 -0.8
343,127 + AO356_01515 0.80 +0.8
343,128 - AO356_01515 0.80 -1.4
343,256 + +1.1
343,256 + +2.5
343,257 - -0.1
343,257 - -0.6
343,257 - -0.8
343,321 + +1.2
343,321 + +2.4
343,321 + +1.5
343,321 + +2.7
343,321 + +2.1
343,321 + +2.3
343,322 - -1.9
343,322 - -1.5
343,322 - -0.4
343,322 - +0.4
343,323 + +1.5
343,323 + +0.7
343,414 + +1.6
343,414 + +2.4
343,414 + +0.6
343,415 - -0.5
343,416 + +1.4
343,458 + +1.2
343,458 + +0.7
343,459 - -0.0
343,459 - -1.2
343,459 - +0.6
343,459 - -0.2
343,464 + -0.2
343,465 - -2.2
343,503 + AO356_01520 0.12 +0.1
343,503 + AO356_01520 0.12 -1.9
343,504 - AO356_01520 0.12 -0.7
343,504 - AO356_01520 0.12 -0.8
343,545 + AO356_01520 0.15 -1.2
343,588 - AO356_01520 0.18 +0.6
343,588 - AO356_01520 0.18 -2.2
343,656 + AO356_01520 0.23 +1.4
343,657 - AO356_01520 0.23 +0.6
343,680 + AO356_01520 0.25 -0.4
343,680 + AO356_01520 0.25 +1.1
343,680 + AO356_01520 0.25 -0.9
343,681 - AO356_01520 0.25 +0.1
343,857 + AO356_01520 0.38 -0.7
343,857 + AO356_01520 0.38 +1.5
343,858 - AO356_01520 0.38 -0.8
343,858 - AO356_01520 0.38 +0.2
344,160 + AO356_01520 0.60 +1.2
344,161 - AO356_01520 0.60 +1.3
344,161 - AO356_01520 0.60 -0.9

Or see this region's nucleotide sequence