Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01490 and AO356_01495 overlap by 4 nucleotides AO356_01495 and AO356_01500 are separated by 300 nucleotides AO356_01500 and AO356_01505 are separated by 2 nucleotides AO356_01505 and AO356_01510 overlap by 4 nucleotides
AO356_01490: AO356_01490 - precorrin 6A synthase, at 338,056 to 338,814
_01490
AO356_01495: AO356_01495 - phosphoglycerate mutase, at 338,811 to 339,389
_01495
AO356_01500: AO356_01500 - RpiR family transcriptional regulator, at 339,690 to 340,544
_01500
AO356_01505: AO356_01505 - isochorismatase, at 340,547 to 341,191
_01505
AO356_01510: AO356_01510 - glutamine synthetase, at 341,188 to 342,540
_01510
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.857 kb on - strand at 339.263 kb on - strand, within AO356_01495 at 339.430 kb on + strand at 339.442 kb on + strand at 339.442 kb on + strand at 339.442 kb on + strand at 339.442 kb on + strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.443 kb on - strand at 339.448 kb on + strand at 339.449 kb on - strand at 339.449 kb on - strand at 339.449 kb on - strand at 339.449 kb on - strand at 339.458 kb on + strand at 339.458 kb on + strand at 339.460 kb on + strand at 339.460 kb on + strand at 339.472 kb on + strand at 339.473 kb on - strand at 339.492 kb on + strand at 339.493 kb on - strand at 339.526 kb on + strand at 339.526 kb on + strand at 339.527 kb on - strand at 339.527 kb on - strand at 339.587 kb on + strand at 339.588 kb on - strand at 339.616 kb on + strand at 339.626 kb on + strand at 339.626 kb on + strand at 339.630 kb on + strand at 339.630 kb on + strand at 339.630 kb on + strand at 339.630 kb on + strand at 339.630 kb on + strand at 339.630 kb on + strand at 339.631 kb on - strand at 339.631 kb on - strand at 339.631 kb on - strand at 339.634 kb on + strand at 339.634 kb on + strand at 339.635 kb on - strand at 339.651 kb on - strand at 339.757 kb on + strand at 339.977 kb on + strand, within AO356_01500 at 339.990 kb on + strand, within AO356_01500 at 339.991 kb on - strand, within AO356_01500 at 340.134 kb on + strand, within AO356_01500 at 340.134 kb on + strand, within AO356_01500 at 340.134 kb on + strand, within AO356_01500 at 340.335 kb on + strand, within AO356_01500 at 340.335 kb on + strand, within AO356_01500 at 340.335 kb on + strand, within AO356_01500 at 340.336 kb on - strand, within AO356_01500 at 340.336 kb on - strand, within AO356_01500 at 340.336 kb on - strand, within AO356_01500 at 340.336 kb on - strand, within AO356_01500 at 340.336 kb on - strand, within AO356_01500 at 340.543 kb on - strand at 340.543 kb on - strand at 340.543 kb on - strand at 340.543 kb on - strand at 340.617 kb on + strand, within AO356_01505 at 340.618 kb on - strand, within AO356_01505 at 340.618 kb on - strand, within AO356_01505 at 340.618 kb on - strand, within AO356_01505 at 340.682 kb on + strand, within AO356_01505 at 340.682 kb on + strand, within AO356_01505 at 340.683 kb on - strand, within AO356_01505 at 340.952 kb on + strand, within AO356_01505 at 340.953 kb on - strand, within AO356_01505 at 340.953 kb on - strand, within AO356_01505 at 341.161 kb on - strand at 341.305 kb on + strand at 341.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 338,857 - -2.9 339,263 - AO356_01495 0.78 -1.2 339,430 + +1.6 339,442 + +0.3 339,442 + +1.8 339,442 + +2.1 339,442 + +1.5 339,443 - -2.4 339,443 - +0.5 339,443 - -0.9 339,443 - -0.7 339,448 + +1.2 339,449 - -1.6 339,449 - -1.0 339,449 - +1.3 339,449 - +0.2 339,458 + +1.1 339,458 + +2.2 339,460 + +0.4 339,460 + +1.6 339,472 + +1.1 339,473 - +1.0 339,492 + +1.2 339,493 - +0.2 339,526 + +1.5 339,526 + +1.0 339,527 - -1.3 339,527 - -0.4 339,587 + +2.3 339,588 - +1.3 339,616 + +0.4 339,626 + +0.9 339,626 + +1.7 339,630 + +2.4 339,630 + +1.7 339,630 + +2.1 339,630 + +2.0 339,630 + +1.2 339,630 + +1.3 339,631 - -1.1 339,631 - -0.5 339,631 - -0.4 339,634 + +1.7 339,634 + +2.7 339,635 - -0.4 339,651 - +0.4 339,757 + +1.2 339,977 + AO356_01500 0.34 +1.6 339,990 + AO356_01500 0.35 +0.9 339,991 - AO356_01500 0.35 +1.4 340,134 + AO356_01500 0.52 +0.9 340,134 + AO356_01500 0.52 +1.9 340,134 + AO356_01500 0.52 +1.6 340,335 + AO356_01500 0.75 +1.4 340,335 + AO356_01500 0.75 +0.7 340,335 + AO356_01500 0.75 +1.5 340,336 - AO356_01500 0.76 +0.5 340,336 - AO356_01500 0.76 +0.2 340,336 - AO356_01500 0.76 +1.6 340,336 - AO356_01500 0.76 +1.3 340,336 - AO356_01500 0.76 -1.6 340,543 - -1.4 340,543 - -0.1 340,543 - -3.0 340,543 - +0.1 340,617 + AO356_01505 0.11 +0.4 340,618 - AO356_01505 0.11 -3.6 340,618 - AO356_01505 0.11 +0.3 340,618 - AO356_01505 0.11 -1.8 340,682 + AO356_01505 0.21 +0.6 340,682 + AO356_01505 0.21 -0.1 340,683 - AO356_01505 0.21 -0.6 340,952 + AO356_01505 0.63 -0.5 340,953 - AO356_01505 0.63 -0.5 340,953 - AO356_01505 0.63 -0.1 341,161 - +0.3 341,305 + +0.3 341,305 + +1.0
Or see this region's nucleotide sequence