Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01325

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01320 and AO356_01325 are separated by 144 nucleotidesAO356_01325 and AO356_01330 are separated by 318 nucleotidesAO356_01330 and AO356_01335 are separated by 69 nucleotides AO356_01320: AO356_01320 - oxidoreductase, at 306,386 to 307,207 _01320 AO356_01325: AO356_01325 - DNA polymerase II, at 307,352 to 309,715 _01325 AO356_01330: AO356_01330 - histidine kinase, at 310,034 to 310,474 _01330 AO356_01335: AO356_01335 - paraquat-inducible protein A, at 310,544 to 311,140 _01335 Position (kb) 307 308 309 310Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 306.381 kb on + strandat 306.539 kb on + strand, within AO356_01320at 306.539 kb on + strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.540 kb on - strand, within AO356_01320at 306.621 kb on - strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.702 kb on + strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.703 kb on - strand, within AO356_01320at 306.704 kb on + strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.705 kb on - strand, within AO356_01320at 306.729 kb on - strand, within AO356_01320at 306.729 kb on - strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 306.866 kb on + strand, within AO356_01320at 307.164 kb on + strandat 307.164 kb on + strandat 307.165 kb on - strandat 307.165 kb on - strandat 307.205 kb on + strandat 307.206 kb on - strandat 307.449 kb on + strandat 307.449 kb on + strandat 307.449 kb on + strandat 307.450 kb on - strandat 307.450 kb on - strandat 307.450 kb on - strandat 307.450 kb on - strandat 307.458 kb on + strandat 307.459 kb on - strandat 307.515 kb on + strandat 307.515 kb on + strandat 307.515 kb on + strandat 307.515 kb on + strandat 307.515 kb on + strandat 307.515 kb on + strandat 307.516 kb on - strandat 307.540 kb on - strandat 307.621 kb on - strand, within AO356_01325at 307.698 kb on + strand, within AO356_01325at 307.698 kb on + strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.699 kb on - strand, within AO356_01325at 307.710 kb on + strand, within AO356_01325at 307.710 kb on + strand, within AO356_01325at 307.710 kb on + strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.711 kb on - strand, within AO356_01325at 307.746 kb on + strand, within AO356_01325at 307.747 kb on - strand, within AO356_01325at 307.812 kb on + strand, within AO356_01325at 307.813 kb on - strand, within AO356_01325at 307.857 kb on + strand, within AO356_01325at 308.082 kb on + strand, within AO356_01325at 308.082 kb on + strand, within AO356_01325at 308.211 kb on + strand, within AO356_01325at 308.212 kb on - strand, within AO356_01325at 308.476 kb on - strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.580 kb on + strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.581 kb on - strand, within AO356_01325at 308.719 kb on - strand, within AO356_01325at 309.120 kb on + strand, within AO356_01325at 309.158 kb on - strand, within AO356_01325at 309.172 kb on + strand, within AO356_01325at 309.172 kb on + strand, within AO356_01325at 309.172 kb on + strand, within AO356_01325at 309.173 kb on - strand, within AO356_01325at 309.173 kb on - strand, within AO356_01325at 309.173 kb on - strand, within AO356_01325at 309.173 kb on - strand, within AO356_01325at 309.174 kb on + strand, within AO356_01325at 309.174 kb on + strand, within AO356_01325at 309.174 kb on + strand, within AO356_01325at 309.174 kb on + strand, within AO356_01325at 309.175 kb on - strand, within AO356_01325at 309.175 kb on - strand, within AO356_01325at 309.175 kb on - strand, within AO356_01325at 309.175 kb on - strand, within AO356_01325at 309.175 kb on - strand, within AO356_01325at 309.213 kb on + strand, within AO356_01325at 309.213 kb on + strand, within AO356_01325at 309.274 kb on - strand, within AO356_01325at 309.468 kb on + strand, within AO356_01325at 309.468 kb on + strand, within AO356_01325at 309.468 kb on + strand, within AO356_01325at 309.468 kb on + strand, within AO356_01325at 309.468 kb on + strand, within AO356_01325at 309.518 kb on + strandat 309.518 kb on + strandat 309.518 kb on + strandat 309.518 kb on + strandat 309.519 kb on - strandat 309.519 kb on - strandat 309.524 kb on + strandat 309.524 kb on + strandat 309.524 kb on + strandat 309.525 kb on - strandat 309.525 kb on - strandat 309.708 kb on - strandat 309.751 kb on + strandat 309.751 kb on + strandat 309.752 kb on - strandat 309.797 kb on + strandat 309.798 kb on - strandat 309.839 kb on + strandat 309.840 kb on - strandat 309.870 kb on - strandat 309.870 kb on - strandat 309.912 kb on + strandat 309.913 kb on - strandat 309.993 kb on - strandat 309.993 kb on - strandat 309.993 kb on - strandat 310.072 kb on + strandat 310.072 kb on + strandat 310.113 kb on + strand, within AO356_01330at 310.114 kb on - strand, within AO356_01330at 310.114 kb on - strand, within AO356_01330at 310.114 kb on - strand, within AO356_01330at 310.208 kb on + strand, within AO356_01330at 310.208 kb on + strand, within AO356_01330at 310.209 kb on - strand, within AO356_01330at 310.209 kb on - strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.363 kb on - strand, within AO356_01330at 310.363 kb on - strand, within AO356_01330at 310.457 kb on + strandat 310.457 kb on + strandat 310.458 kb on - strandat 310.458 kb on - strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.513 kb on + strandat 310.514 kb on - strandat 310.593 kb on - strandat 310.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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306,381 + +1.4
306,539 + AO356_01320 0.19 +0.2
306,539 + AO356_01320 0.19 -1.9
306,540 - AO356_01320 0.19 -0.7
306,540 - AO356_01320 0.19 +0.1
306,540 - AO356_01320 0.19 +0.2
306,540 - AO356_01320 0.19 +0.6
306,621 - AO356_01320 0.29 -1.5
306,702 + AO356_01320 0.38 -2.1
306,702 + AO356_01320 0.38 +1.3
306,702 + AO356_01320 0.38 -0.1
306,702 + AO356_01320 0.38 -0.4
306,702 + AO356_01320 0.38 +0.3
306,702 + AO356_01320 0.38 -0.8
306,702 + AO356_01320 0.38 -1.5
306,702 + AO356_01320 0.38 +0.2
306,702 + AO356_01320 0.38 +0.8
306,703 - AO356_01320 0.39 +1.4
306,703 - AO356_01320 0.39 -0.6
306,703 - AO356_01320 0.39 +0.6
306,703 - AO356_01320 0.39 +1.0
306,703 - AO356_01320 0.39 +0.2
306,703 - AO356_01320 0.39 -0.2
306,703 - AO356_01320 0.39 +0.6
306,704 + AO356_01320 0.39 -0.4
306,705 - AO356_01320 0.39 +0.7
306,705 - AO356_01320 0.39 +0.5
306,705 - AO356_01320 0.39 -0.7
306,729 - AO356_01320 0.42 +0.5
306,729 - AO356_01320 0.42 +2.1
306,866 + AO356_01320 0.58 +0.7
306,866 + AO356_01320 0.58 +1.3
306,866 + AO356_01320 0.58 -0.3
306,866 + AO356_01320 0.58 -0.7
306,866 + AO356_01320 0.58 +0.8
306,866 + AO356_01320 0.58 +1.0
307,164 + +2.0
307,164 + -0.3
307,165 - -1.1
307,165 - -0.5
307,205 + +1.0
307,206 - +0.1
307,449 + +0.6
307,449 + +0.1
307,449 + +1.9
307,450 - +1.0
307,450 - +0.1
307,450 - -1.8
307,450 - -1.7
307,458 + -1.9
307,459 - +0.0
307,515 + -1.1
307,515 + +0.4
307,515 + -0.5
307,515 + +0.3
307,515 + +1.0
307,515 + +2.0
307,516 - -1.0
307,540 - +0.8
307,621 - AO356_01325 0.11 +0.8
307,698 + AO356_01325 0.15 +0.7
307,698 + AO356_01325 0.15 -0.1
307,699 - AO356_01325 0.15 -0.4
307,699 - AO356_01325 0.15 +0.5
307,699 - AO356_01325 0.15 -3.1
307,699 - AO356_01325 0.15 +0.1
307,699 - AO356_01325 0.15 +0.0
307,699 - AO356_01325 0.15 -0.5
307,710 + AO356_01325 0.15 -0.0
307,710 + AO356_01325 0.15 +1.2
307,710 + AO356_01325 0.15 -1.7
307,711 - AO356_01325 0.15 +1.2
307,711 - AO356_01325 0.15 -0.9
307,711 - AO356_01325 0.15 +0.6
307,711 - AO356_01325 0.15 +0.3
307,711 - AO356_01325 0.15 -1.8
307,711 - AO356_01325 0.15 -1.0
307,746 + AO356_01325 0.17 +0.3
307,747 - AO356_01325 0.17 -0.3
307,812 + AO356_01325 0.19 +0.8
307,813 - AO356_01325 0.20 -0.2
307,857 + AO356_01325 0.21 +0.7
308,082 + AO356_01325 0.31 +0.6
308,082 + AO356_01325 0.31 -0.5
308,211 + AO356_01325 0.36 -1.3
308,212 - AO356_01325 0.36 -1.0
308,476 - AO356_01325 0.48 -0.1
308,580 + AO356_01325 0.52 +0.7
308,580 + AO356_01325 0.52 -0.3
308,580 + AO356_01325 0.52 +0.1
308,580 + AO356_01325 0.52 -0.3
308,580 + AO356_01325 0.52 +1.1
308,580 + AO356_01325 0.52 +0.8
308,580 + AO356_01325 0.52 -0.8
308,580 + AO356_01325 0.52 +0.4
308,580 + AO356_01325 0.52 -0.1
308,581 - AO356_01325 0.52 +0.3
308,581 - AO356_01325 0.52 -2.2
308,581 - AO356_01325 0.52 -0.0
308,581 - AO356_01325 0.52 +1.3
308,581 - AO356_01325 0.52 -1.0
308,581 - AO356_01325 0.52 +1.6
308,719 - AO356_01325 0.58 +0.1
309,120 + AO356_01325 0.75 +1.5
309,158 - AO356_01325 0.76 -0.0
309,172 + AO356_01325 0.77 -0.6
309,172 + AO356_01325 0.77 +1.7
309,172 + AO356_01325 0.77 -0.3
309,173 - AO356_01325 0.77 -0.5
309,173 - AO356_01325 0.77 +1.6
309,173 - AO356_01325 0.77 +1.2
309,173 - AO356_01325 0.77 +0.1
309,174 + AO356_01325 0.77 -0.5
309,174 + AO356_01325 0.77 -1.4
309,174 + AO356_01325 0.77 +1.1
309,174 + AO356_01325 0.77 +0.1
309,175 - AO356_01325 0.77 +0.9
309,175 - AO356_01325 0.77 +0.8
309,175 - AO356_01325 0.77 +1.0
309,175 - AO356_01325 0.77 -0.2
309,175 - AO356_01325 0.77 +1.0
309,213 + AO356_01325 0.79 +1.0
309,213 + AO356_01325 0.79 -0.8
309,274 - AO356_01325 0.81 +0.9
309,468 + AO356_01325 0.90 -0.9
309,468 + AO356_01325 0.90 -0.1
309,468 + AO356_01325 0.90 +0.1
309,468 + AO356_01325 0.90 +0.8
309,468 + AO356_01325 0.90 +0.2
309,518 + -0.5
309,518 + +1.3
309,518 + +0.1
309,518 + +1.7
309,519 - -1.1
309,519 - -0.2
309,524 + -1.4
309,524 + -1.0
309,524 + -1.0
309,525 - -1.4
309,525 - -0.6
309,708 - +0.6
309,751 + -0.1
309,751 + +1.1
309,752 - -2.1
309,797 + +0.7
309,798 - -0.3
309,839 + -1.2
309,840 - -0.6
309,870 - -1.2
309,870 - +0.4
309,912 + -0.9
309,913 - -0.1
309,993 - +0.0
309,993 - -1.1
309,993 - -1.6
310,072 + +1.1
310,072 + +0.9
310,113 + AO356_01330 0.18 -0.0
310,114 - AO356_01330 0.18 +2.0
310,114 - AO356_01330 0.18 +0.3
310,114 - AO356_01330 0.18 -1.8
310,208 + AO356_01330 0.39 -1.7
310,208 + AO356_01330 0.39 +1.3
310,209 - AO356_01330 0.40 -0.6
310,209 - AO356_01330 0.40 +0.0
310,362 + AO356_01330 0.74 -0.6
310,362 + AO356_01330 0.74 -0.5
310,362 + AO356_01330 0.74 +0.1
310,363 - AO356_01330 0.75 +0.1
310,363 - AO356_01330 0.75 -1.8
310,457 + +0.2
310,457 + +1.2
310,458 - -0.0
310,458 - -1.8
310,511 + +0.2
310,511 + +0.6
310,511 + +1.0
310,511 + +1.3
310,512 - -3.0
310,512 - +0.2
310,512 - -0.0
310,512 - -0.5
310,512 - -0.1
310,512 - +0.6
310,512 - -1.3
310,512 - +0.4
310,512 - -2.1
310,513 + -0.8
310,514 - -1.6
310,593 - +0.3
310,593 - -1.1

Or see this region's nucleotide sequence