Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00835

Experiment: methylglyoxal 0.016 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00830 and AO356_00835 are separated by 420 nucleotidesAO356_00835 and AO356_00840 overlap by 1 nucleotides AO356_00830: AO356_00830 - hypothetical protein, at 188,228 to 190,279 _00830 AO356_00835: AO356_00835 - hypothetical protein, at 190,700 to 191,749 _00835 AO356_00840: AO356_00840 - hypothetical protein, at 191,749 to 193,281 _00840 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 189.721 kb on + strand, within AO356_00830at 189.722 kb on - strand, within AO356_00830at 189.722 kb on - strand, within AO356_00830at 189.823 kb on + strand, within AO356_00830at 189.823 kb on + strand, within AO356_00830at 189.823 kb on + strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.824 kb on - strand, within AO356_00830at 189.828 kb on - strand, within AO356_00830at 189.868 kb on + strand, within AO356_00830at 189.888 kb on + strand, within AO356_00830at 189.942 kb on - strand, within AO356_00830at 189.969 kb on + strand, within AO356_00830at 189.969 kb on + strand, within AO356_00830at 189.970 kb on - strand, within AO356_00830at 189.970 kb on - strand, within AO356_00830at 190.051 kb on + strand, within AO356_00830at 190.051 kb on + strand, within AO356_00830at 190.051 kb on + strand, within AO356_00830at 190.052 kb on - strand, within AO356_00830at 190.052 kb on - strand, within AO356_00830at 190.052 kb on - strand, within AO356_00830at 190.084 kb on + strandat 190.085 kb on - strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.088 kb on + strandat 190.089 kb on - strandat 190.089 kb on - strandat 190.089 kb on - strandat 190.089 kb on - strandat 190.089 kb on - strandat 190.089 kb on - strandat 190.243 kb on + strandat 190.244 kb on - strandat 190.263 kb on + strandat 190.263 kb on + strandat 190.264 kb on - strandat 190.264 kb on - strandat 190.271 kb on + strandat 190.271 kb on + strandat 190.309 kb on + strandat 190.310 kb on - strandat 190.337 kb on + strandat 190.337 kb on + strandat 190.337 kb on + strandat 190.337 kb on + strandat 190.338 kb on - strandat 190.355 kb on - strandat 190.424 kb on + strandat 190.425 kb on - strandat 190.440 kb on + strandat 190.440 kb on + strandat 190.460 kb on - strandat 190.460 kb on - strandat 190.556 kb on + strandat 190.556 kb on + strandat 190.556 kb on + strandat 190.557 kb on - strandat 190.557 kb on - strandat 190.557 kb on - strandat 190.557 kb on - strandat 190.587 kb on + strandat 190.587 kb on + strandat 190.588 kb on - strandat 190.617 kb on - strandat 190.739 kb on + strandat 190.740 kb on - strandat 190.740 kb on - strandat 190.800 kb on + strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.801 kb on - strandat 190.803 kb on + strandat 190.804 kb on - strandat 190.807 kb on + strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.808 kb on - strand, within AO356_00835at 190.867 kb on - strand, within AO356_00835at 190.867 kb on - strand, within AO356_00835at 190.873 kb on + strand, within AO356_00835at 190.879 kb on + strand, within AO356_00835at 190.879 kb on + strand, within AO356_00835at 190.963 kb on + strand, within AO356_00835at 190.964 kb on - strand, within AO356_00835at 190.977 kb on + strand, within AO356_00835at 190.977 kb on + strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.115 kb on - strand, within AO356_00835at 191.176 kb on + strand, within AO356_00835at 191.176 kb on + strand, within AO356_00835at 191.177 kb on - strand, within AO356_00835at 191.224 kb on + strand, within AO356_00835at 191.225 kb on - strand, within AO356_00835at 191.225 kb on - strand, within AO356_00835at 191.281 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.325 kb on + strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.326 kb on - strand, within AO356_00835at 191.345 kb on + strand, within AO356_00835at 191.377 kb on + strand, within AO356_00835at 191.450 kb on + strand, within AO356_00835at 191.450 kb on + strand, within AO356_00835at 191.507 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.546 kb on - strand, within AO356_00835at 191.604 kb on + strand, within AO356_00835at 191.632 kb on + strand, within AO356_00835at 191.676 kb on - strandat 191.710 kb on + strandat 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.914 kb on + strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.915 kb on - strand, within AO356_00840at 191.916 kb on + strand, within AO356_00840at 191.917 kb on - strand, within AO356_00840at 191.917 kb on - strand, within AO356_00840at 192.089 kb on - strand, within AO356_00840at 192.089 kb on - strand, within AO356_00840at 192.204 kb on - strand, within AO356_00840at 192.204 kb on - strand, within AO356_00840at 192.211 kb on + strand, within AO356_00840at 192.212 kb on - strand, within AO356_00840at 192.212 kb on - strand, within AO356_00840at 192.257 kb on - strand, within AO356_00840at 192.279 kb on + strand, within AO356_00840at 192.280 kb on - strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.312 kb on + strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.313 kb on - strand, within AO356_00840at 192.390 kb on + strand, within AO356_00840at 192.390 kb on + strand, within AO356_00840at 192.402 kb on + strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.403 kb on - strand, within AO356_00840at 192.568 kb on - strand, within AO356_00840at 192.673 kb on - strand, within AO356_00840at 192.673 kb on - strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.698 kb on + strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840at 192.699 kb on - strand, within AO356_00840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
remove
189,721 + AO356_00830 0.73 +0.2
189,722 - AO356_00830 0.73 +0.2
189,722 - AO356_00830 0.73 +0.1
189,823 + AO356_00830 0.78 -0.5
189,823 + AO356_00830 0.78 -0.2
189,823 + AO356_00830 0.78 -0.0
189,824 - AO356_00830 0.78 -0.8
189,824 - AO356_00830 0.78 +1.5
189,824 - AO356_00830 0.78 +0.3
189,824 - AO356_00830 0.78 +0.5
189,824 - AO356_00830 0.78 -0.0
189,824 - AO356_00830 0.78 +1.9
189,828 - AO356_00830 0.78 -0.5
189,868 + AO356_00830 0.80 -0.2
189,888 + AO356_00830 0.81 +0.9
189,942 - AO356_00830 0.84 -0.3
189,969 + AO356_00830 0.85 +1.5
189,969 + AO356_00830 0.85 +0.4
189,970 - AO356_00830 0.85 +0.2
189,970 - AO356_00830 0.85 +1.1
190,051 + AO356_00830 0.89 -2.0
190,051 + AO356_00830 0.89 +0.9
190,051 + AO356_00830 0.89 -0.1
190,052 - AO356_00830 0.89 +0.6
190,052 - AO356_00830 0.89 +0.4
190,052 - AO356_00830 0.89 -0.2
190,084 + -0.3
190,085 - +0.0
190,088 + +1.2
190,088 + +1.4
190,088 + +1.1
190,088 + +0.5
190,088 + -0.4
190,088 + -0.6
190,088 + -0.8
190,089 - -1.2
190,089 - +0.6
190,089 - +1.4
190,089 - -0.5
190,089 - -1.1
190,089 - -1.2
190,243 + -0.2
190,244 - -1.2
190,263 + +0.3
190,263 + +1.4
190,264 - -0.7
190,264 - -0.4
190,271 + +0.3
190,271 + +0.7
190,309 + -0.5
190,310 - -2.8
190,337 + +0.4
190,337 + -0.2
190,337 + +0.4
190,337 + +0.9
190,338 - -0.6
190,355 - -0.6
190,424 + -0.2
190,425 - +0.2
190,440 + +0.3
190,440 + -1.1
190,460 - +0.9
190,460 - +0.2
190,556 + +2.5
190,556 + -0.2
190,556 + -0.1
190,557 - +1.4
190,557 - +0.9
190,557 - +0.9
190,557 - +0.8
190,587 + +1.8
190,587 + +0.5
190,588 - +0.6
190,617 - +0.3
190,739 + -2.6
190,740 - -2.1
190,740 - +0.0
190,800 + +1.2
190,801 - +0.6
190,801 - -0.3
190,801 - +0.0
190,801 - -0.6
190,803 + +1.5
190,804 - +0.2
190,807 + AO356_00835 0.10 +2.7
190,808 - AO356_00835 0.10 -0.7
190,808 - AO356_00835 0.10 +1.7
190,808 - AO356_00835 0.10 -1.4
190,867 - AO356_00835 0.16 +1.2
190,867 - AO356_00835 0.16 -0.9
190,873 + AO356_00835 0.16 +0.6
190,879 + AO356_00835 0.17 +0.7
190,879 + AO356_00835 0.17 -1.8
190,963 + AO356_00835 0.25 -1.0
190,964 - AO356_00835 0.25 +0.2
190,977 + AO356_00835 0.26 +0.2
190,977 + AO356_00835 0.26 -0.1
191,115 - AO356_00835 0.40 +0.6
191,115 - AO356_00835 0.40 -0.3
191,115 - AO356_00835 0.40 +0.4
191,115 - AO356_00835 0.40 +2.4
191,176 + AO356_00835 0.45 -0.4
191,176 + AO356_00835 0.45 +0.6
191,177 - AO356_00835 0.45 +0.1
191,224 + AO356_00835 0.50 +0.0
191,225 - AO356_00835 0.50 +1.7
191,225 - AO356_00835 0.50 -0.4
191,281 + AO356_00835 0.55 +1.2
191,325 + AO356_00835 0.60 -0.2
191,325 + AO356_00835 0.60 +0.9
191,325 + AO356_00835 0.60 +0.9
191,325 + AO356_00835 0.60 +2.0
191,326 - AO356_00835 0.60 +0.0
191,326 - AO356_00835 0.60 -0.8
191,326 - AO356_00835 0.60 -0.3
191,326 - AO356_00835 0.60 +0.0
191,345 + AO356_00835 0.61 +1.3
191,377 + AO356_00835 0.64 +0.5
191,450 + AO356_00835 0.71 +2.7
191,450 + AO356_00835 0.71 +0.5
191,507 - AO356_00835 0.77 +0.3
191,546 - AO356_00835 0.81 +0.4
191,546 - AO356_00835 0.81 -0.1
191,546 - AO356_00835 0.81 -0.2
191,604 + AO356_00835 0.86 -2.0
191,632 + AO356_00835 0.89 +1.2
191,676 - +0.4
191,710 + +0.7
191,914 + AO356_00840 0.11 +0.2
191,914 + AO356_00840 0.11 +0.1
191,914 + AO356_00840 0.11 +1.2
191,914 + AO356_00840 0.11 -0.1
191,914 + AO356_00840 0.11 +0.7
191,915 - AO356_00840 0.11 +0.7
191,915 - AO356_00840 0.11 +0.4
191,915 - AO356_00840 0.11 -0.3
191,915 - AO356_00840 0.11 +0.2
191,915 - AO356_00840 0.11 +0.5
191,915 - AO356_00840 0.11 -0.6
191,916 + AO356_00840 0.11 -0.5
191,917 - AO356_00840 0.11 +0.3
191,917 - AO356_00840 0.11 +0.3
192,089 - AO356_00840 0.22 -0.2
192,089 - AO356_00840 0.22 +0.8
192,204 - AO356_00840 0.30 +1.1
192,204 - AO356_00840 0.30 +0.2
192,211 + AO356_00840 0.30 +0.3
192,212 - AO356_00840 0.30 -2.0
192,212 - AO356_00840 0.30 +0.4
192,257 - AO356_00840 0.33 -2.0
192,279 + AO356_00840 0.35 +0.3
192,280 - AO356_00840 0.35 +0.1
192,312 + AO356_00840 0.37 +0.8
192,312 + AO356_00840 0.37 +1.3
192,312 + AO356_00840 0.37 -0.6
192,313 - AO356_00840 0.37 +0.6
192,313 - AO356_00840 0.37 -0.2
192,313 - AO356_00840 0.37 +1.0
192,390 + AO356_00840 0.42 -0.3
192,390 + AO356_00840 0.42 -0.2
192,402 + AO356_00840 0.43 -0.5
192,403 - AO356_00840 0.43 +0.1
192,403 - AO356_00840 0.43 +0.6
192,403 - AO356_00840 0.43 +0.5
192,403 - AO356_00840 0.43 +0.7
192,403 - AO356_00840 0.43 +0.8
192,403 - AO356_00840 0.43 -0.3
192,568 - AO356_00840 0.53 +0.5
192,673 - AO356_00840 0.60 -2.2
192,673 - AO356_00840 0.60 +0.6
192,698 + AO356_00840 0.62 +1.3
192,698 + AO356_00840 0.62 +0.1
192,698 + AO356_00840 0.62 -1.3
192,699 - AO356_00840 0.62 +1.1
192,699 - AO356_00840 0.62 -0.2
192,699 - AO356_00840 0.62 -0.1

Or see this region's nucleotide sequence